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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495917 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26902868 26902868 PRJNA495917_S_NODE_6621_length_201_cov_1.915663_g6427_i0 PRJNA495917 6621 201 1.915663 3.85048263 root 1 Root_unresolved Root_unresolved 82.4 2.24e-18   NR NP_008530.1 7797 g6427 i0 97.6 907.059701492537 42 1 62.7 0 201 76 36 77 NP_008530.1 NADH dehydrogenase subunit 3 [Squalus acanthias] diamond 182319 82.8 0.995169082125604 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Squaliformes Squalidae Squalus Squalus acanthias
27108376 27108376 PRJNA495917_S_NODE_7022_length_197_cov_1.728395_g6828_i0 PRJNA495917 7022 197 1.728395 3.40493815 Bos taurus 9913 Chordata Chordata 127 1.52e-32   NR NP_803461.2 9913 g6828 i0 100 5.93908629441624 65 0 99 0 1 195 172 236 NP_803461.2 DNA nucleotidylexotransferase [Bos taurus] diamond 1170 127 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
27503504 27503504 PRJNA495917_S_NODE_6503_length_202_cov_2.664671_g6309_i0 PRJNA495917 6503 202 2.664671 5.38263542 Chordata 7711 Chordata Chordata 139 1.75e-38   NR KAJ1119051.1 8319 g6309 i0 97 46.009900990099 66 2 98 0 3 200 95 160 KAJ1119051.1 hypothetical protein NDU88_007237 [Pleurodeles waltl] diamond 9294 139 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28340283 28340283 PRJNA495917_S_NODE_13826_length_158_cov_1.626016_g13632_i0 PRJNA495917 13826 158 1.626016 2.56910528 Polypterus senegalus 55291 Chordata Chordata 54.3 9.59e-7   NR KAG2470185.1 55291 g13632 i0 96.3 7.68987341772152 27 1 51.3 0 157 77 377 403 KAG2470185.1 RL7A protein, partial [Polypterus senegalus] diamond 1215 54.7 0.992687385740402 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28561439 28561439 PRJNA495917_S_NODE_9047_length_180_cov_3.400000_g8853_i0 PRJNA495917 9047 180 3.4 6.12 Ovis aries 9940 Chordata Chordata 60.5 6.84e-10   NR KAG5193682.1 9940 g8853 i0 60.9 0.766666666666667 46 18 76.7 0 4 141 64 109 KAG5193682.1 hypothetical protein JEQ12_020043 [Ovis aries] diamond 138 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
28860904 28860904 PRJNA495917_S_NODE_10688_length_171_cov_1.970588_g10494_i0 PRJNA495917 10688 171 1.970588 3.36970548 Chordata 7711 Chordata Chordata 117 3.74e-32   NR AAN73378.1 7830 g10494 i0 98.2 63.8070175438597 56 1 98.2 0 169 2 8 63 AAN73378.1 ribosomal protein L8, partial [Scyliorhinus canicula] diamond 10911 118 0.991525423728814 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
29003815 29003815 PRJNA495917_S_NODE_6608_length_201_cov_2.216867_g6414_i0 PRJNA495917 6608 201 2.216867 4.45590267 Sorex araneus 42254 Chordata Chordata 122 2.1e-33   NR XP_054989307.1 42254 g6414 i0 98.5 65 67 1 100 0 201 1 20 86 XP_054989307.1 60S ribosomal protein L23a isoform X1 [Sorex araneus] diamond 13065 123 0.991869918699187 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex araneus
29161460 29161460 PRJNA495917_S_NODE_749_length_536_cov_8.093812_g573_i0 PRJNA495917 749 536 8.093812 43.38283232 Chiloscyllium plagiosum 36176 Chordata Chordata 130 6.84e-32   NR XP_043541060.1 36176 g573 i0 66 1.04664179104478 94 32 52.6 0 372 91 251 344 XP_043541060.1 syncytin-B-like [Chiloscyllium plagiosum] diamond 561 130 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
29524093 29524093 PRJNA495917_S_NODE_2570_length_305_cov_2.296296_g2376_i0 PRJNA495917 2570 305 2.296296 7.0037028 Mammalia 40674 Chordata Chordata 142 1.07e-40   NR XP_036611613.1 9337 g2376 i0 100 63.255737704918 67 0 65.9 0 304 104 100 166 XP_036611613.1 LOW QUALITY PROTEIN: 60S ribosomal protein L37a [Trichosurus vulpecula] diamond 19293 142 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
30345833 30345833 PRJNA495917_S_NODE_11112_length_169_cov_1.738806_g10918_i0 PRJNA495917 11112 169 1.738806 2.93858214 Chordata 7711 Chordata Chordata 110 2.36e-28   NR XP_006885804.1 28737 g10918 i0 100 79.5266272189349 56 0 99.4 0 2 169 35 90 XP_006885804.1 PREDICTED: 40S ribosomal protein S3 [Elephantulus edwardii] diamond 13440 110 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Macroscelidea Macroscelididae Elephantulus Elephantulus edwardii
30677166 30677166 PRJNA495917_S_NODE_7813_length_190_cov_1.361290_g7619_i0 PRJNA495917 7813 190 1.3612899999999999 2.586451 Erpetoichthys calabaricus 27687 Chordata Chordata 61.6 3.61e-9   NR XP_051791274.1 27687 g7619 i0 74.4 4.31052631578947 39 10 61.6 0 16 132 168 206 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 819 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31672710 31672710 PRJNA495917_S_NODE_5777_length_212_cov_1.581921_g5583_i0 PRJNA495917 5777 212 1.581921 3.35367252 Artiodactyla 91561 Chordata Chordata 145 5.919999999999999e-40   NR XP_070325943.1 9874 g5583 i0 98.6 3.90566037735849 69 1 97.6 0 211 5 331 399 XP_070325943.1 DNA nucleotidylexotransferase [Odocoileus virginianus] diamond 828 145 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
32416680 32416680 PRJNA495917_S_NODE_3119_length_278_cov_1.683128_g2925_i0 PRJNA495917 3119 278 1.683128 4.67909584 Latimeria chalumnae 7897 Chordata Chordata 188 2.71e-59   NR AAS49549.1 7897 g2925 i0 98.9 76.8237410071942 92 1 99.3 0 277 2 48 139 AAS49549.1 ribosomal protein L11, partial [Latimeria chalumnae] diamond 21357 189 0.994708994708995 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;