RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495917 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29271252 29271252 PRJNA495917_S_NODE_6789_length_199_cov_4.426829_g6595_i0 PRJNA495917 6789 199 4.426829 8.80938971 root 1 Root_unresolved Root_unresolved 105 1.28e-26   NR XP_052750468.1 7137 g6595 i0 69.7 285.467336683417 66 20 99.5 0 2 199 10 75 XP_052750468.1 ras-related C3 botulinum toxin substrate 1-like [Galleria mellonella] diamond 56808 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Pyralidae Galleria Galleria mellonella
31846933 31846933 PRJNA495917_S_NODE_10977_length_170_cov_1.259259_g10783_i0 PRJNA495917 10977 170 1.259259 2.1407403 Trichonephila clavata 2740835 Arthropoda Arthropoda 64.7 2.47e-10   NR GFR12399.1 2740835 g10783 i0 55.6 6.68823529411765 54 24 95.3 0 168 7 452 505 GFR12399.1 uncharacterized protein TNCT_165321 [Trichonephila clavata] diamond 1137 64.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Nephilidae Trichonephila Trichonephila clavata
32384933 32384933 PRJNA495917_S_NODE_16239_length_151_cov_2.215517_g16045_i0 PRJNA495917 16239 151 2.215517 3.34543067 Plodia interpunctella 58824 Arthropoda Arthropoda 58.2 3.87e-8   NR XP_053611421.1 58824 g16045 i0 62.5 3.97350993377483 40 15 79.5 0 151 32 273 312 XP_053611421.1 uncharacterized protein LOC128675780 [Plodia interpunctella] diamond 600 58.5 0.994871794871795 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Pyralidae Plodia Plodia interpunctella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;