RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA495917 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27929842 27929842 PRJNA495917_S_NODE_5345_length_219_cov_1.956522_g5151_i0 PRJNA495917 5345 219 1.956522 4.28478318 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 42.4 0.0382   NR MBE2181581.1 2201154 g5151 i0 33.9 0.849315068493151 62 38 80.8 1 188 12 990 1051 MBE2181581.1 SDR family NAD(P)-dependent oxidoreductase [Chthoniobacterales bacterium] diamond 186 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
30171705 30171705 PRJNA495917_S_NODE_13592_length_159_cov_1.290323_g13398_i0 PRJNA495917 13592 159 1.290323 2.05161357 Coraliomargarita sp. SDUM461 2024828 Bacteria Bacteria 57 1.6e-8   NR WP_308984314.1 3041258 g13398 i0 54.2 1.45283018867925 48 21 88.7 1 18 158 7 54 WP_308984314.1 DUF4326 domain-containing protein [Coraliomargarita sp. SDUM461004] diamond 231 57 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Thalassobacterium Thalassobacterium sedimentorum
30866808 30866808 PRJNA495917_S_NODE_14094_length_157_cov_2.934426_g13900_i0 PRJNA495917 14094 157 2.934426 4.60704882 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.9 0.00452   NR MBM4009064.1 2026780 g13900 i0 37.5 1.52866242038217 40 22 70.7 1 2 112 137 176 MBM4009064.1 DMT family transporter [Planctomycetota bacterium] diamond 240 43.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31941763 31941763 PRJNA495917_S_NODE_6797_length_199_cov_3.036585_g6603_i0 PRJNA495917 6797 199 3.036585 6.04280415 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 42.7 0.021   NR MFT5470505.1 2026801 g6603 i0 36.4 0.994974874371859 66 41 98 1 2 196 103 168 MFT5470505.1 MFS family permease [Verrucomicrobiales bacterium] diamond 198 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32495527 32495527 PRJNA495917_S_NODE_16779_length_150_cov_1.391304_g16585_i0 PRJNA495917 16779 150 1.391304 2.086956 Pseudomonadati 3379134 Bacteria Bacteria 53.9 1.15e-6   NR HXU58913.1 2499141 g16585 i0 51.2 4.1 41 20 82 0 145 23 61 101 HXU58913.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 615 53.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32527339 32527339 PRJNA495917_S_NODE_4539_length_234_cov_2.432161_g4345_i0 PRJNA495917 4539 234 2.432161 5.69125674 Bacteria 2 Bacteria Bacteria 109 9.31e-26   NR MFK7818047.1 2026779 g4345 i0 69.7 3.92307692307692 76 21 96.2 2 234 10 1377 1451 MFK7818047.1 Calx-beta domain-containing protein [Planctomycetaceae bacterium] diamond 918 109 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;