RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA495917" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA495917 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28624666 28624666 PRJNA495917_S_NODE_2487_length_310_cov_1.934545_g2293_i0 PRJNA495917 2487 310 1.934545 5.9970895 Patescibacteria group bacterium 2052139 Bacteria Bacteria 135 2.11e-35   NR MDE2097525.1 2052139 g2293 i0 63.5 1.00645161290323 104 35 99.7 2 2 310 194 295 MDE2097525.1 hypothetical protein [Patescibacteria group bacterium] diamond 312 135 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32147400 32147400 PRJNA495917_S_NODE_12138_length_164_cov_2.023256_g11944_i0 PRJNA495917 12138 164 2.023256 3.31813984 Bacteria 2 Bacteria Bacteria 97.8 3.94e-22   NR MDE2097560.1 2052139 g11944 i0 81.5 3.95121951219512 54 10 98.8 0 3 164 141 194 MDE2097560.1 hypothetical protein [Patescibacteria group bacterium] diamond 648 97.8 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32747628 32747628 PRJNA495917_S_NODE_14640_length_156_cov_0.991736_g14446_i0 PRJNA495917 14640 156 0.991736 1.54710816 Pseudomonadati 3379134 Bacteria Bacteria 95.9 6.94e-22   NR KRT70958.1 1640516 g14446 i0 86.5 3 52 7 100 0 156 1 103 154 KRT70958.1 MAG: hypothetical protein XU15_C0002G0111 [candidate division NC10 bacterium CSP1-5] diamond 468 95.9 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         candidate division NC10 bacterium CSP1-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;