RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495391 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22152901 22152901 PRJNA495391_S_NODE_35158_length_205_cov_4.500000_g34106_i0 PRJNA495391 35158 205 4.5 9.225 Dirofilaria immitis 6287 Nematoda Nematoda 114 1.53e-27   NR MCP9263801.1 6287 g34106 i0 77.6 9.80487804878049 67 15 98 0 201 1 363 429 MCP9263801.1 ADP/ATP translocase [Dirofilaria immitis] diamond 2010 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
28056019 28056019 PRJNA495391_S_NODE_6645_length_476_cov_3.176871_g5601_i0 PRJNA495391 6645 476 3.176871 15.12190596 Strongyloides ratti 34506 Nematoda Nematoda 83.2 3.61e-15   NR XP_024504660.1 34506 g5601 i0 44.1 0.857142857142857 68 38 42.9 0 173 376 2 69 XP_024504660.1 Ecdysone-induced protein 63E [Strongyloides ratti] diamond 408 83.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
31166443 31166443 PRJNA495391_S_NODE_52935_length_170_cov_2.437037_g51883_i0 PRJNA495391 52935 170 2.437037 4.1429629 Metazoa 33208 Nematoda Nematoda 43.9 4.35e-4   NR EJW76241.1 6293 g51883 i0 64 2.80588235294118 25 9 44.1 0 160 86 3 27 EJW76241.1 hypothetical protein WUBG_12852, partial [Wuchereria bancrofti] diamond 477 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
32005263 32005263 PRJNA495391_S_NODE_40998_length_191_cov_5.096154_g39946_i0 PRJNA495391 40998 191 5.096154 9.73365414 Anisakis simplex 6269 Nematoda Nematoda 43.9 0.0075   NR VDK17567.1 6269 g39946 i0 60.6 0.518324607329843 33 13 51.8 0 13 111 1638 1670 VDK17567.1 unnamed protein product [Anisakis simplex] diamond 99 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;