RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15135779 15135779 PRJNA495391_S_NODE_65632_length_155_cov_1.841667_g64580_i0 PRJNA495391 65632 155 1.841667 2.85458385 Euglena gracilis 3039 Euglenozoa other_Eukaryota 97.8 2.9e-24   NR QLA09595.1 3039 g64580 i0 84 0.967741935483871 50 8 96.8 0 150 1 103 152 QLA09595.1 40S small subunit ribosomal protein eS31 [Euglena gracilis] diamond 150 97.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
27139824 27139824 PRJNA495391_S_NODE_56142_length_166_cov_1.480916_g55090_i0 PRJNA495391 56142 166 1.480916 2.45832056 Bodo saltans 75058 Euglenozoa other_Eukaryota 47 4.29e-4   NR CUG86219.1 75058 g55090 i0 51.1 1.68072289156627 47 23 84.9 0 165 25 1110 1156 CUG86219.1 FtsX-like permease family protein, putative [Bodo saltans] diamond 279 47 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;