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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495391 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10679637 10679637 PRJNA495391_S_NODE_23129_length_250_cov_1.902326_g22077_i0 PRJNA495391 23129 250 1.902326 4.755815 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 7.39e-38   NR XP_035672114.1 7739 g22077 i0 85.7 14.268 70 10 84 0 250 41 131 200 XP_035672114.1 peptidyl-prolyl cis-trans isomerase-like [Branchiostoma floridae] diamond 3567 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
19601899 19601899 PRJNA495391_S_NODE_21976_length_256_cov_2.004525_g20924_i0 PRJNA495391 21976 256 2.004525 5.131584 Clavelina lepadiformis 159417 Chordata Chordata 85.5 4.07e-17   NR CAK8685090.1 159417 g20924 i0 50 1.96875 84 41 98.4 1 1 252 688 770 CAK8685090.1 unnamed protein product [Clavelina lepadiformis] diamond 504 85.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
26982067 26982067 PRJNA495391_S_NODE_31322_length_217_cov_1.587912_g30270_i0 PRJNA495391 31322 217 1.587912 3.44576904 Passer domesticus 48849 Chordata Chordata 73.6 3.52e-13   NR XP_064281669.1 48849 g30270 i0 57.1 21.9400921658986 63 21 87.1 1 21 209 375 431 XP_064281669.1 pseudouridylate synthase RPUSD2 [Passer domesticus] diamond 4761 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Passer Passer domesticus
27709236 27709236 PRJNA495391_S_NODE_47824_length_178_cov_2.321678_g46772_i0 PRJNA495391 47824 178 2.321678 4.13258684 Bambusicola thoracicus 9083 Chordata Chordata 93.6 5.21e-22   NR POI30389.1 9083 g46772 i0 69.5 0.99438202247191 59 17 97.8 1 178 5 26 84 POI30389.1 hypothetical protein CIB84_005861 [Bambusicola thoracicus] diamond 177 93.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Bambusicola Bambusicola thoracicus
27866526 27866526 PRJNA495391_S_NODE_58225_length_163_cov_2.023438_g57173_i0 PRJNA495391 58225 163 2.023438 3.29820394 Myotis myotis 51298 Chordata Chordata 42 0.0228   NR KAF6303689.1 51298 g57173 i0 54.8 0.570552147239264 31 13 57.1 1 3 95 274 303 KAF6303689.1 DnaJ heat shock protein family (Hsp40) member C9 [Myotis myotis] diamond 93 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
28087533 28087533 PRJNA495391_S_NODE_12485_length_339_cov_2.226974_g11433_i0 PRJNA495391 12485 339 2.226974 7.54944186 Bos mutus 72004 Chordata Chordata 149 6.2899999999999986e-40   NR MXQ84838.1 72004 g11433 i0 92.5 0.707964601769911 80 6 70.8 0 339 100 46 125 MXQ84838.1 hypothetical protein [Bos mutus] diamond 240 149 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
28782106 28782106 PRJNA495391_S_NODE_11647_length_351_cov_1.949367_g10595_i0 PRJNA495391 11647 351 1.949367 6.84227817 Cervus canadensis 1574408 Chordata Chordata 163 8.069999999999999e-47   NR XP_043291415.1 1574408 g10595 i0 71 3.1965811965812 93 27 79.5 0 349 71 248 340 XP_043291415.1 zinc finger protein 90 homolog isoform X3 [Cervus canadensis] diamond 1122 163 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus canadensis
29224616 29224616 PRJNA495391_S_NODE_53729_length_169_cov_2.067164_g52677_i0 PRJNA495391 53729 169 2.067164 3.49350716 Chroicocephalus ridibundus 1192867 Chordata Chordata 41.2 0.0497   NR XP_063187770.1 1192867 g52677 i0 56.7 0.532544378698225 30 13 53.3 0 56 145 43 72 XP_063187770.1 coiled-coil domain-containing protein 177 [Chroicocephalus ridibundus] diamond 90 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Laridae Chroicocephalus Chroicocephalus ridibundus
29555479 29555479 PRJNA495391_S_NODE_66570_length_154_cov_1.848739_g65518_i0 PRJNA495391 66570 154 1.848739 2.84705806 Opisthokonta 33154 Chordata Chordata 81.3 2.56e-16   NR XP_043937132.1 7888 g65518 i0 69.4 6.72077922077922 49 15 95.5 0 152 6 17 65 XP_043937132.1 tubulin alpha-8 chain-like [Protopterus annectens] diamond 1035 81.3 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
30645471 30645471 PRJNA495391_S_NODE_14833_length_311_cov_1.300725_g13781_i0 PRJNA495391 14833 311 1.300725 4.04525475 Anolis carolinensis 28377 Chordata Chordata 94.7 2.48e-21   NR XP_008122103.1 28377 g13781 i0 69.2 0.627009646302251 65 20 62.7 0 210 16 81 145 XP_008122103.1 protein GVQW3 [Anolis carolinensis] diamond 195 94.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
30724381 30724381 PRJNA495391_S_NODE_53354_length_170_cov_1.340741_g52302_i0 PRJNA495391 53354 170 1.340741 2.2792597 Metazoa 33208 Chordata Chordata 55.5 3.64e-8   NR XP_064418531.1 7897 g52302 i0 55.6 4.94117647058824 45 17 79.4 1 165 31 55 96 XP_064418531.1 cathepsin K-like [Latimeria chalumnae] diamond 840 55.8 0.99462365591397806 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32290368 32290368 PRJNA495391_S_NODE_49139_length_176_cov_1.964539_g48087_i0 PRJNA495391 49139 176 1.964539 3.45758864 Myxine glutinosa 7769 Chordata Chordata 102 1.13e-23   NR XP_067956421.1 7769 g48087 i0 82.8 0.988636363636364 58 10 98.9 0 3 176 191 248 XP_067956421.1 inositol-3-phosphate synthase 1-A-like isoform X2 [Myxine glutinosa] diamond 174 102 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
32700510 32700510 PRJNA495391_S_NODE_52440_length_171_cov_1.750000_g51388_i0 PRJNA495391 52440 171 1.75 2.9925 Caloenas nicobarica 187106 Chordata Chordata 58.5 3.71e-8   NR XP_065492949.1 187106 g51388 i0 65 2.54385964912281 40 14 70.2 0 31 150 90 129 XP_065492949.1 inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 [Caloenas nicobarica] diamond 435 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Caloenas Caloenas nicobarica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;