RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28656081 28656081 PRJNA495391_S_NODE_17007_length_290_cov_3.686275_g15955_i0 PRJNA495391 17007 290 3.686275 10.6901975 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 75.1 4.43e-14   NR XP_011132135.1 110365 g15955 i0 49.4 0.879310344827586 85 42 87.9 1 20 274 102 185 XP_011132135.1 hypothetical protein GNI_130140 [Gregarina niphandrodes] diamond 255 75.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
32068389 32068389 PRJNA495391_S_NODE_42458_length_188_cov_2.581699_g41406_i0 PRJNA495391 42458 188 2.581699 4.85359412 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 67.4 1.03e-11   NR XP_011132135.1 110365 g41406 i0 50.9 0.909574468085106 57 28 91 0 181 11 45 101 XP_011132135.1 hypothetical protein GNI_130140 [Gregarina niphandrodes] diamond 171 67.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;