RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA495391 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27282262 27282262 PRJNA495391_S_NODE_58643_length_163_cov_1.242188_g57591_i0 PRJNA495391 58643 163 1.242188 2.02476644 Bacteria 2 Bacteria Bacteria 73.6 2.19e-14   NR WP_343759401.1 392408 g57591 i0 68.5 5.96319018404908 54 16 99.4 1 1 162 4 56 WP_343759401.1 TerD family protein [Deinococcus depolymerans] diamond 972 73.9 0.995940460081191 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus depolymerans
29792516 29792516 PRJNA495391_S_NODE_69691_length_151_cov_2.025862_g68639_i0 PRJNA495391 69691 151 2.025862 3.05905162 Synergistaceae bacterium 2053624 Bacteria Bacteria 60.8 3.99e-10   NR MEG1502580.1 2053624 g68639 i0 54.2 0.95364238410596 48 19 91.4 2 149 12 2 48 MEG1502580.1 hypothetical protein [Synergistaceae bacterium] diamond 144 60.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32274073 32274073 PRJNA495391_S_NODE_36098_length_203_cov_1.827381_g35046_i0 PRJNA495391 36098 203 1.827381 3.70958343 Deinococcus 1298 Bacteria Bacteria 58.5 5.84e-8   NR WP_407571789.1 468914 g35046 i0 62.2 1.59605911330049 37 14 54.7 0 2 112 135 171 WP_407571789.1 VWA domain-containing protein [Deinococcus altitudinis] diamond 324 58.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;