RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30803653 30803653 PRJNA495391_S_NODE_63334_length_158_cov_0.967480_g62282_i0 PRJNA495391 63334 158 0.96748 1.5286184 Pseudostreptobacillus hongkongensis 1162717 Bacteria Bacteria 99.4 1.11e-25   NR WP_066896328.1 1162717 g62282 i0 94.2 1.9746835443038 52 3 98.7 0 2 157 6 57 WP_066896328.1 30S ribosomal protein S16 [Pseudostreptobacillus hongkongensis] diamond 312 99.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudostreptobacillus Pseudostreptobacillus hongkongensis
32543323 32543323 PRJNA495391_S_NODE_64139_length_157_cov_1.262295_g63087_i0 PRJNA495391 64139 157 1.262295 1.98180315 Streptobacillus notomytis 1712031 Bacteria Bacteria 90.5 1.42e-19   NR WP_073508139.1 1712031 g63087 i0 86 1.91082802547771 50 7 95.5 0 152 3 273 322 WP_073508139.1 nicotinate phosphoribosyltransferase [Streptobacillus notomytis] diamond 300 90.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus notomytis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;