RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA495391" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 3 ✖

bioproject 1

  • PRJNA495391 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6853986 6853986 PRJNA495391_S_NODE_35506_length_204_cov_4.757396_g34454_i0 PRJNA495391 35506 204 4.757396 9.70508784 Solemya velum gill symbiont 2340 Bacteria Bacteria 62.4 2.33e-9   NR WP_078453740.1 2340 g34454 i0 55.3 0.691176470588235 47 21 69.1 0 36 176 295 341 WP_078453740.1 reverse transcriptase domain-containing protein, partial [Solemya velum gill symbiont] diamond 141 62.4 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont
27756166 27756166 PRJNA495391_S_NODE_22624_length_253_cov_1.215596_g21572_i0 PRJNA495391 22624 253 1.215596 3.07545788 root 1 Root_unresolved Root_unresolved 100 1.52e-22   NR WP_162181122.1 2340 g21572 i0 53.1 47.9881422924901 81 38 96 0 244 2 535 615 WP_162181122.1 reverse transcriptase domain-containing protein [Solemya velum gill symbiont] diamond 12141 101 0.99009900990099 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont
28498298 28498298 PRJNA495391_S_NODE_65247_length_156_cov_0.958678_g64195_i0 PRJNA495391 65247 156 0.958678 1.49553768 Solemya elarraichensis gill symbiont 1918949 Bacteria Bacteria 48.9 7.47e-5   NR WP_135568158.1 1918949 g64195 i0 47.8 0.884615384615385 46 24 88.5 0 17 154 130 175 WP_135568158.1 reverse transcriptase domain-containing protein, partial [Solemya elarraichensis gill symbiont] diamond 138 48.9 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya elarraichensis gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;