RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA494251" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA494251 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27108298 27108298 PRJNA494251_P_NODE_27082_length_282_cov_2.641148_g26768_i0 PRJNA494251 27082 282 2.641148 7.44803736 Amoeba proteus 5775 Tubulinea other_Eukaryota 50.4 1.01e-4   NR AKN09692.1 5775 g26768 i0 33.3 0.829787234042553 78 50 83 2 270 37 3 78 AKN09692.1 Tom40 [Amoeba proteus] diamond 234 50.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27803582 27803582 PRJNA494251_P_NODE_20984_length_311_cov_3.605042_g20670_i0 PRJNA494251 20984 311 3.605042 11.21168062 Copromyxa protea 931554 Tubulinea other_Eukaryota 129 1.4299999999999996e-34   NR BAV21603.1 931554 g20670 i0 60.8 0.983922829581994 102 40 98.4 0 2 307 130 231 BAV21603.1 elongation factor 2 alpha, partial [Copromyxa protea] diamond 306 129 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
31467593 31467593 PRJNA494251_P_NODE_3276_length_683_cov_2.614754_g3000_i0 PRJNA494251 3276 683 2.614754 17.85876982 Amoeba proteus 5775 Tubulinea other_Eukaryota 111 1.16e-25   NR AKN09692.1 5775 g3000 i0 35.5 0.816983894582723 186 114 79.5 4 611 69 99 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 558 111 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;