RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA494251" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA494251 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26760273 26760273 PRJNA494251_P_NODE_14701_length_361_cov_0.920139_g14390_i0 PRJNA494251 14701 361 0.920139 3.32170179 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 48.9 8.05e-4   NR QVK17080.1 2231116 g14390 i0 30.2 1.42105263157895 86 47 71.5 1 340 83 48 120 QVK17080.1 GNAT family N-acetyltransferase [Mycoplasmatota bacterium] diamond 513 48.9 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
26982038 26982038 PRJNA494251_P_NODE_41682_length_247_cov_0.885057_g41368_i0 PRJNA494251 41682 247 0.885057 2.18609079 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 45.1 0.00486   NR MDR0986010.1 2685873 g41368 i0 35.8 0.813765182186235 67 39 76.5 1 211 23 157 223 MDR0986010.1 ribonuclease III [Mycoplasmataceae bacterium] diamond 201 45.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
28561338 28561338 PRJNA494251_P_NODE_12967_length_379_cov_1.509804_g12659_i0 PRJNA494251 12967 379 1.509804 5.72215716 Candidatus Faecisoma merdavium 2840801 Bacteria Bacteria 44.3 0.0447   NR HIS90586.1 2840801 g12659 i0 35.1 0.767810026385224 97 49 69.7 4 348 85 50 141 HIS90586.1 hypothetical protein [Candidatus Faecisoma merdavium] diamond 291 44.3 1 Bacteria   Bacillati Mycoplasmatota       Candidatus Faecisoma Candidatus Faecisoma merdavium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;