RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA494251" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA494251 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28308718 28308718 PRJNA494251_P_NODE_2926_length_716_cov_2.259720_g2657_i0 PRJNA494251 2926 716 2.25972 16.1795952 Methanosphaera sp. 2666342 Archaea Archaea 57.8 1.32e-5   NR MEE3325473.1 2666342 g2657 i0 25.4 1.88128491620112 244 128 96.8 13 697 5 100 302 MEE3325473.1 hypothetical protein [Methanosphaera sp.] diamond 1347 57.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
28656039 28656039 PRJNA494251_P_NODE_24347_length_294_cov_1.361991_g24033_i0 PRJNA494251 24347 294 1.361991 4.00425354 Methanobrevibacter sp. 66852 Archaea Archaea 102 2.41e-25   NR MEE3444538.1 66852 g24033 i0 52.6 0.989795918367347 97 46 99 0 3 293 5 101 MEE3444538.1 40S ribosomal protein S19 [Methanobrevibacter sp.] diamond 291 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;