RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493828 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30076731 30076731 PRJNA493828_P_NODE_46212_length_209_cov_7.875000_g45793_i0 PRJNA493828 46212 209 7.875 16.45875 Nitrospirota bacterium 2026887 Bacteria Bacteria 74.3 1.64e-13   NR MEK6803703.1 2026887 g45793 i0 49.3 0.990430622009569 69 35 99 0 3 209 54 122 MEK6803703.1 restriction endonuclease subunit S [Nitrospirota bacterium] diamond 207 74.3 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
30298530 30298530 PRJNA493828_P_NODE_23072_length_277_cov_1.348039_g22653_i0 PRJNA493828 23072 277 1.348039 3.73406803 Nitrospirota bacterium 2026887 Bacteria Bacteria 87.8 6.74e-20   NR MEK7305963.1 2026887 g22653 i0 83.7 1.54873646209386 49 8 53.1 0 1 147 83 131 MEK7305963.1 HPF/RaiA family ribosome-associated protein [Nitrospirota bacterium] diamond 429 87.8 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
30898502 30898502 PRJNA493828_P_NODE_39374_length_241_cov_2.190476_g38955_i0 PRJNA493828 39374 241 2.190476 5.27904716 Nitrospira sp. 70125 Bacteria Bacteria 140 9.64e-37   NR MBH0192353.1 70125 g38955 i0 93.8 0.995850622406639 80 5 99.6 0 241 2 256 335 MBH0192353.1 GAF domain-containing protein [Nitrospira sp.] diamond 240 140 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31182414 31182414 PRJNA493828_P_NODE_38715_length_242_cov_1.414201_g38296_i0 PRJNA493828 38715 242 1.414201 3.42236642 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 99.8 6.049999999999999e-24   NR HYM89160.1 2026770 g38296 i0 61.7 1.00413223140496 81 30 99.2 1 3 242 38 118 HYM89160.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Nitrospiraceae bacterium] diamond 243 99.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
31783509 31783509 PRJNA493828_P_NODE_26377_length_266_cov_2.295337_g25958_i0 PRJNA493828 26377 266 2.295337 6.10559642 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 120 2.29e-30   NR HXT67641.1 2026770 g25958 i0 69.7 0.857142857142857 76 22 84.6 1 2 226 284 359 HXT67641.1 hypothetical protein [Nitrospiraceae bacterium] diamond 228 120 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;