RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493828 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20876272 20876272 PRJNA493828_P_NODE_1557_length_856_cov_11.282248_g1255_i0 PRJNA493828 1557 856 11.282248 96.57604288 root 1 Root_unresolved Root_unresolved 166 3.45e-44   NR KHN75988.1 6265 g1255 i0 49.8 190.885514018692 217 109 76.1 0 77 727 9 225 KHN75988.1 Actin-2 [Toxocara canis] diamond 163398 167 0.994011976047904 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27487720 27487720 PRJNA493828_P_NODE_1843_length_778_cov_5.384397_g1526_i0 PRJNA493828 1843 778 5.384397 41.89060866 Pristionchus fissidentatus 1538716 Nematoda Nematoda 66.6 1e-9   NR GMT28562.1 1538716 g1526 i0 29.9 0.516709511568123 134 94 51.7 0 406 5 1 134 GMT28562.1 hypothetical protein PFISCL1PPCAC_19859, partial [Pristionchus fissidentatus] diamond 402 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32210626 32210626 PRJNA493828_P_NODE_13458_length_318_cov_14.428571_g13039_i0 PRJNA493828 13458 318 14.428571 45.88285578 Pristionchus 54125 Nematoda Nematoda 46.2 0.00395   NR GMT00836.1 358040 g13039 i0 27.5 3.27358490566038 102 74 96.2 0 316 11 123 224 GMT00836.1 hypothetical protein PENTCL1PPCAC_23010, partial [Pristionchus entomophagus] diamond 1041 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
32668994 32668994 PRJNA493828_P_NODE_18580_length_293_cov_2.290909_g18161_i0 PRJNA493828 18580 293 2.290909 6.71236337 Pristionchus mayeri 1317129 Nematoda Nematoda 53.1 1.45e-5   NR GMR55918.1 1317129 g18161 i0 26.8 0.993174061433447 97 71 99.3 0 1 291 97 193 GMR55918.1 hypothetical protein PMAYCL1PPCAC_26113, partial [Pristionchus mayeri] diamond 291 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;