RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26760258 26760258 PRJNA493828_P_NODE_33881_length_248_cov_3.400000_g33462_i0 PRJNA493828 33881 248 3.4 8.432 Lichtheimia ramosa 688394 Fungi Fungi 52.4 1.55e-5   NR CDS11844.1 688394 g33462 i0 61.3 0.375 31 12 37.5 0 248 156 250 280 CDS11844.1 hypothetical protein LRAMOSA11488 [Lichtheimia ramosa] diamond 93 52.4 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ramosa
29823972 29823972 PRJNA493828_P_NODE_19911_length_288_cov_1.218605_g19492_i0 PRJNA493828 19911 288 1.218605 3.5095824 Rhizophagus irregularis 588596 Fungi Fungi 118 5.35e-31   NR PKK70049.1 588596 g19492 i0 62.2 1.875 90 33 92.7 1 283 17 124 213 PKK70049.1 aspartyl aminopeptidase-like protein [Rhizophagus irregularis] diamond 540 118 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Rhizophagus Rhizophagus irregularis
30914148 30914148 PRJNA493828_P_NODE_32594_length_250_cov_1.711864_g32175_i0 PRJNA493828 32594 250 1.711864 4.27966 Rhizophagus 295919 Fungi Fungi 62.8 3.52e-9   NR GBC30566.2 747089 g32175 i0 65.9 1.584 44 15 52.8 0 118 249 434 477 GBC30566.2 enzymatic polyprotein, putative [Rhizophagus irregularis DAOM 181602=DAOM 197198] diamond 396 62.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Rhizophagus Rhizophagus irregularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;