RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3025923 3025923 PRJNA493828_P_NODE_6083_length_447_cov_5.288770_g5690_i0 PRJNA493828 6083 447 5.28877 23.6408019 Bodo saltans 75058 Euglenozoa other_Eukaryota 199 2.36e-60   NR CUG01980.1 75058 g5690 i0 72 0.885906040268456 132 35 87.2 1 57 446 2 133 CUG01980.1 mitochondrial carrier protein, putative [Bodo saltans] diamond 396 199 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
10678368 10678368 PRJNA493828_P_NODE_34369_length_248_cov_0.880000_g33950_i0 PRJNA493828 34369 248 0.88 2.1824 Bodo saltans 75058 Euglenozoa other_Eukaryota 119 4.57e-29   NR CUG93885.1 75058 g33950 i0 69.1 0.979838709677419 81 25 98 0 1 243 341 421 CUG93885.1 2-oxoglutarate dehydrogenase, putative [Bodo saltans] diamond 243 119 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28640153 28640153 PRJNA493828_P_NODE_11547_length_340_cov_1.153558_g11128_i0 PRJNA493828 11547 340 1.153558 3.9220972 Kinetoplastea 5653 Euglenozoa other_Eukaryota 133 6.17e-35   NR KAG8348758.1 5699 g11128 i0 56.8 5.88529411764706 111 48 97.9 0 333 1 226 336 KAG8348758.1 putative phosphoribosylpyrophosphate synthetase [Trypanosoma vivax] diamond 2001 134 0.992537313432836 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;