RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA493828 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27740601 27740601 PRJNA493828_P_NODE_37064_length_244_cov_1.678363_g36645_i0 PRJNA493828 37064 244 1.678363 4.09520572 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.4 1.32e-12   NR XP_004367485.1 1257118 g36645 i0 45.1 1.00819672131148 82 44 99.6 1 2 244 278 359 XP_004367485.1 histidine acid phosphatase superfamily protein [Acanthamoeba castellanii str. Neff] diamond 246 72.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27992985 27992985 PRJNA493828_P_NODE_13325_length_320_cov_1.246964_g12906_i0 PRJNA493828 13325 320 1.246964 3.9902848 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 161 6.1e-49   NR XP_004339588.1 1257118 g12906 i0 88.2 0.796875 85 10 79.7 0 3 257 25 109 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 255 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29729178 29729178 PRJNA493828_P_NODE_25450_length_269_cov_2.178571_g25031_i0 PRJNA493828 25450 269 2.178571 5.86035599 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 4.25e-8   NR XP_004338074.1 1257118 g25031 i0 63.6 0.490706319702602 44 13 49.1 1 133 2 248 288 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 132 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29839747 29839747 PRJNA493828_P_NODE_35671_length_246_cov_1.335260_g35252_i0 PRJNA493828 35671 246 1.33526 3.2847396 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 2.03e-9   NR AFK80364.1 5755 g35252 i0 42.7 3.54878048780488 75 36 89 2 235 17 256 325 AFK80364.1 cysteine proteinase 3, partial [Acanthamoeba castellanii] diamond 873 63.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30330138 30330138 PRJNA493828_P_NODE_22792_length_278_cov_1.102439_g22373_i0 PRJNA493828 22792 278 1.102439 3.06478042 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 116 3.55e-28   NR QVH35979.1 5755 g22373 i0 63.4 1.00359712230216 93 31 97.1 1 5 274 122 214 QVH35979.1 adenylyl cyclase-associated protein [Acanthamoeba castellanii] diamond 279 116 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30456398 30456398 PRJNA493828_P_NODE_34453_length_248_cov_0.880000_g34034_i0 PRJNA493828 34453 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 1.91e-21   NR XP_004344861.1 1257118 g34034 i0 76.8 0.67741935483871 56 13 67.7 0 177 10 19 74 XP_004344861.1 eukaryotic translation initiation factor 4e1a-binding protein [Acanthamoeba castellanii str. Neff] diamond 168 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;