RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24700964 24700964 PRJNA493828_P_NODE_5780_length_459_cov_1.186528_g5388_i0 PRJNA493828 5780 459 1.186528 5.44616352 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 192 6.540000000000001e-58   NR MES1907458.1 1215613 g5388 i0 73.3 0.856209150326797 131 35 85.6 0 396 4 4 134 MES1907458.1 hypothetical protein [Cercozoa sp. M6MM] diamond 393 192 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
27045303 27045303 PRJNA493828_P_NODE_38602_length_242_cov_1.810651_g38183_i0 PRJNA493828 38602 242 1.810651 4.38177542 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 77.8 7.43e-15   NR AAT09089.1 227086 g38183 i0 49.4 0.954545454545455 77 39 95.5 0 2 232 84 160 AAT09089.1 calmodulin like myosin light chain [Bigelowiella natans] diamond 231 77.8 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
29224529 29224529 PRJNA493828_P_NODE_28009_length_261_cov_3.212766_g27590_i0 PRJNA493828 28009 261 3.212766 8.38531926 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 73.9 4.77e-13   NR MES1907871.1 1215613 g27590 i0 41.4 1 87 49 97.7 2 256 2 109 195 MES1907871.1 hypothetical protein [Cercozoa sp. M6MM] diamond 261 73.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;