RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493828 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26918721 26918721 PRJNA493828_P_NODE_21522_length_282_cov_1.641148_g21103_i0 PRJNA493828 21522 282 1.641148 4.62803736 Campylobacterales bacterium 2268180 Bacteria Bacteria 117 3.43e-29   NR MFP4332947.1 2268180 g21103 i0 58.5 1 94 39 100 0 282 1 165 258 MFP4332947.1 hypothetical protein [Campylobacterales bacterium] diamond 282 117 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium
29098063 29098063 PRJNA493828_P_NODE_40248_length_239_cov_7.078313_g39829_i0 PRJNA493828 40248 239 7.078313 16.91716807 Campylobacterales bacterium 2268180 Bacteria Bacteria 108 5.64e-27   NR HOI83097.1 2268180 g39829 i0 100 0.690376569037657 55 0 69 0 73 237 1 55 HOI83097.1 SLAC1 anion channel family protein [Campylobacterales bacterium] diamond 165 108 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium
29255596 29255596 PRJNA493828_P_NODE_24529_length_272_cov_2.065327_g24110_i0 PRJNA493828 24529 272 2.065327 5.61768944 Helicobacter pylori 210 Bacteria Bacteria 60.5 3.69e-10   NR GAA9037979.1 210 g24110 i0 69.4 0.705882352941177 36 11 39.7 0 270 163 4 39 GAA9037979.1 hypothetical protein Kyoto184A_00910 [Helicobacter pylori] diamond 192 60.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29839743 29839743 PRJNA493828_P_NODE_12251_length_332_cov_0.872587_g11832_i0 PRJNA493828 12251 332 0.872587 2.89698884 Pseudomonadati 3379134 Bacteria Bacteria 47 0.00318   NR WP_127681565.1 2579250 g11832 i0 46.8 4.12048192771084 47 24 42.5 1 141 1 1 46 WP_127681565.1 DNA repair protein RadA [Nautilia sp. PV-1] diamond 1368 47.4 0.991561181434599 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia sp. PV-1
30361708 30361708 PRJNA493828_P_NODE_36272_length_245_cov_1.982558_g35853_i0 PRJNA493828 36272 245 1.982558 4.8572671 Helicobacter pylori 210 Bacteria Bacteria 87 3.09e-19   NR GAA9040163.1 210 g35853 i0 64.4 1.78775510204082 73 26 89.4 0 27 245 95 167 GAA9040163.1 hypothetical protein Kyoto184A_01960 [Helicobacter pylori] diamond 438 87 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31293126 31293126 PRJNA493828_P_NODE_9875_length_362_cov_7.152249_g9457_i0 PRJNA493828 9875 362 7.152249 25.89114138 Pseudomonadati 3379134 Bacteria Bacteria 107 4.06e-28   NR GAA9180441.1 210 g9457 i0 100 1.74033149171271 47 0 39 0 51 191 1 47 GAA9180441.1 hypothetical protein Kyoto193A_2360 [Helicobacter pylori] diamond 630 107 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;