RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493828" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22151025 22151025 PRJNA493828_P_NODE_14758_length_310_cov_3.873418_g14339_i0 PRJNA493828 14758 310 3.873418 12.0075958 Truepera radiovictrix 332249 Bacteria Bacteria 84.3 2.01e-16   NR WP_013177409.1 332249 g14339 i0 77.6 0.474193548387097 49 11 47.4 0 148 2 510 558 WP_013177409.1 NADPH-dependent assimilatory sulfite reductase hemoprotein subunit [Truepera radiovictrix] diamond 147 84.3 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
28245251 28245251 PRJNA493828_P_NODE_43246_length_229_cov_2.461538_g42827_i0 PRJNA493828 43246 229 2.461538 5.63692202 Truepera radiovictrix 332249 Bacteria Bacteria 120 6.82e-30   NR WP_041947694.1 332249 g42827 i0 74.7 0.982532751091703 75 19 98.3 0 2 226 142 216 WP_041947694.1 ABC transporter substrate-binding protein [Truepera radiovictrix] diamond 225 120 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
29476528 29476528 PRJNA493828_P_NODE_28050_length_261_cov_2.686170_g27631_i0 PRJNA493828 28050 261 2.68617 7.0109037 Deinococcus taklimakanensis 536443 Bacteria Bacteria 45.1 0.00721   NR WP_386845053.1 536443 g27631 i0 40.3 0.770114942528736 67 28 63.2 2 1 165 31 97 WP_386845053.1 hypothetical protein [Deinococcus taklimakanensis] diamond 201 45.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;