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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA493827" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA493827 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3023303 3023303 PRJNA493827_P_NODE_238983_length_226_cov_2.078431_g236784_i0 PRJNA493827 238983 226 2.078431 4.69725406 Amoeba proteus 5775 Tubulinea other_Eukaryota 150 3.7e-42   NR AAP88974.1 5775 g236784 i0 92 0.995575221238938 75 6 99.6 0 2 226 5 79 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 225 150 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
5574655 5574655 PRJNA493827_P_NODE_17465_length_950_cov_2.150513_g15783_i0 PRJNA493827 17465 950 2.150513 20.4298735 Copromyxa protea 931554 Tubulinea other_Eukaryota 528 3.81e-185   NR BAN33737.1 931554 g15783 i0 82.5 0.994736842105263 315 52 98.5 1 14 949 1 315 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 945 528 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8124266 8124266 PRJNA493827_P_NODE_179107_length_255_cov_1.197802_g176909_i0 PRJNA493827 179107 255 1.197802 3.0543951 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 166 3.2799999999999996e-47   NR BAN33737.1 931554 g176909 i0 95.3 7 85 4 100 0 1 255 50 134 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 1785 166 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18321523 18321523 PRJNA493827_P_NODE_119595_length_312_cov_2.150628_g117397_i0 PRJNA493827 119595 312 2.150628 6.70995936 Chaos carolinense 160823 Tubulinea other_Eukaryota 169 1.09e-51   NR AFX73058.1 160823 g117397 i0 86.9 0.951923076923077 99 12 94.2 1 295 2 1 99 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 297 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
26855594 26855594 PRJNA493827_P_NODE_80821_length_383_cov_1.487097_g78623_i0 PRJNA493827 80821 383 1.487097 5.69558151 Copromyxa protea 931554 Tubulinea other_Eukaryota 223 2.66e-68   NR BAN33737.1 931554 g78623 i0 84.3 0.994778067885117 127 20 99.5 0 2 382 249 375 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 381 223 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
26934264 26934264 PRJNA493827_P_NODE_206162_length_246_cov_2.439306_g203964_i0 PRJNA493827 206162 246 2.439306 6.00069276 root 1 Root_unresolved Root_unresolved 96.7 1.3e-22   NR ABD46563.1 5778 g203964 i0 50 5 82 41 100 0 246 1 103 184 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 1230 97.4 0.992813141683778 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28434962 28434962 PRJNA493827_P_NODE_78846_length_388_cov_1.707937_g76648_i0 PRJNA493827 78846 388 1.707937 6.62679556 Amoeba proteus 5775 Tubulinea other_Eukaryota 224 1.15e-72   NR AAW58116.1 5775 g76648 i0 83.1 0.958762886597938 124 21 95.9 0 387 16 50 173 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 372 224 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28576736 28576736 PRJNA493827_P_NODE_180207_length_254_cov_1.276243_g178009_i0 PRJNA493827 180207 254 1.276243 3.24165722 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.2 9.89e-8   NR AAY21191.1 5778 g178009 i0 45.5 3.16535433070866 66 36 78 0 1 198 173 238 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 804 58.2 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29066475 29066475 PRJNA493827_P_NODE_25528_length_753_cov_1.035294_g23591_i0 PRJNA493827 25528 753 1.035294 7.79576382 Amoeba proteus 5775 Tubulinea other_Eukaryota 318 5.329999999999999e-104   NR AAD37351.1 5775 g23591 i0 76.6 0.832669322709163 209 48 83.3 1 61 687 3 210 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 627 318 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29318804 29318804 PRJNA493827_P_NODE_207529_length_246_cov_0.890173_g205331_i0 PRJNA493827 207529 246 0.890173 2.18982558 Amoeba proteus 5775 Tubulinea other_Eukaryota 154 3.099999999999999e-43   NR AAP88974.1 5775 g205331 i0 90.1 0.98780487804878 81 8 98.8 0 3 245 284 364 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 243 154 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29823854 29823854 PRJNA493827_P_NODE_175371_length_258_cov_1.248649_g173173_i0 PRJNA493827 175371 258 1.248649 3.22151442 Copromyxa protea 931554 Tubulinea other_Eukaryota 166 4.8e-47   NR BAN33737.1 931554 g173173 i0 89.5 1 86 9 100 0 1 258 315 400 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 258 166 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30361691 30361691 PRJNA493827_P_NODE_76372_length_395_cov_2.447205_g74174_i0 PRJNA493827 76372 395 2.447205 9.66645975 Copromyxa protea 931554 Tubulinea other_Eukaryota 230 3.18e-71   NR BAN33737.1 931554 g74174 i0 90.3 0.941772151898734 124 12 94.2 0 2 373 341 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 372 230 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30424792 30424792 PRJNA493827_P_NODE_191413_length_250_cov_0.870056_g189215_i0 PRJNA493827 191413 250 0.870056 2.17514 Amoeba proteus 5775 Tubulinea other_Eukaryota 66.2 2.09e-10   NR ABD16178.1 5775 g189215 i0 60.3 0.816 68 27 81.6 0 245 42 135 202 ABD16178.1 110 kDa actin binding protein interacting with anti-filamin antibody [Amoeba proteus] diamond 204 66.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30835055 30835055 PRJNA493827_P_NODE_181594_length_253_cov_1.155556_g179396_i0 PRJNA493827 181594 253 1.155556 2.92355668 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 63.9 1.46e-9   NR AAZ06403.1 5778 g179396 i0 42.9 0.74703557312253 63 36 74.7 0 190 2 519 581 AAZ06403.1 mitochondrial helicase twinkle [Vermamoeba vermiformis] diamond 189 63.9 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30850710 30850710 PRJNA493827_P_NODE_11694_length_1209_cov_2.279930_g10325_i0 PRJNA493827 11694 1209 2.27993 27.5643537 root 1 Root_unresolved Root_unresolved 307 1.14e-97   NR AKT93936.1 5778 g10325 i0 54.1 1.3970223325062 281 125 69.7 2 34 876 124 400 AKT93936.1 translation elongation factor Tu [Vermamoeba vermiformis] diamond 1689 310 0.990322580645161 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32416537 32416537 PRJNA493827_P_NODE_78339_length_389_cov_3.528481_g76141_i0 PRJNA493827 78339 389 3.528481 13.72579109 Copromyxa protea 931554 Tubulinea other_Eukaryota 222 5.7499999999999985e-68   NR BAN33737.1 931554 g76141 i0 89.1 0.917737789203085 119 13 91.8 0 389 33 344 462 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 357 222 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
32605987 32605987 PRJNA493827_P_NODE_154920_length_275_cov_1.698020_g152722_i0 PRJNA493827 154920 275 1.69802 4.669555 Chaos carolinense 160823 Tubulinea other_Eukaryota 152 9.13e-44   NR AFX73090.1 160823 g152722 i0 81.3 1.98545454545455 91 17 99.3 0 274 2 99 189 AFX73090.1 elongation factor 2 alpha, partial [Chaos carolinense] diamond 546 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;