RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493632" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493632 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26823545 26823545 PRJNA493632_P_NODE_335801_length_286_cov_1.389671_g332362_i0 PRJNA493632 335801 286 1.389671 3.97445906 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 83.2 5.53e-17   NR MFN8611091.1 3107663 g332362 i0 44.7 1.99300699300699 94 51 97.6 1 281 3 34 127 MFN8611091.1 FecR family protein [Vulcanimicrobiota bacterium] diamond 570 83.2 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29728994 29728994 PRJNA493632_P_NODE_713590_length_216_cov_20.370629_g710148_i0 PRJNA493632 713590 216 20.370629 44.00055864 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 50.1 6.15e-5   NR GMU54463.1 3036772 g710148 i0 45.2 0.861111111111111 62 34 86.1 0 199 14 129 190 GMU54463.1 MAG: hypothetical protein AMXMBFR33_36090 [Candidatus Xenobia bacterium] diamond 186 50.1 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium
31277328 31277328 PRJNA493632_P_NODE_719035_length_211_cov_5.760870_g715593_i0 PRJNA493632 719035 211 5.76087 12.1554357 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 88.2 1.3e-19   NR MFA5505779.1 3107663 g715593 i0 58.6 0.995260663507109 70 27 99.5 1 210 1 93 160 MFA5505779.1 nuclear transport factor 2 family protein [Vulcanimicrobiota bacterium] diamond 210 88.2 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;