RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA493632" and tax_phylum = "Parabasalia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA493632 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31498815 31498815 PRJNA493632_P_NODE_358696_length_281_cov_1.423077_g355257_i0 PRJNA493632 358696 281 1.423077 3.99884637 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47.4 0.00136   NR XP_001582262.1 412133 g355257 i0 37.2 0.832740213523132 78 45 81.1 2 228 1 39 114 XP_001582262.1 hypothetical protein TVAGG3_0174640 [Trichomonas vaginalis G3] diamond 234 47.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31562034 31562034 PRJNA493632_P_NODE_115596_length_428_cov_3.642254_g112185_i0 PRJNA493632 115596 428 3.642254 15.58884712 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 46.2 0.0137   NR XP_001581087.1 412133 g112185 i0 31.3 0.672897196261682 96 59 65.2 2 141 419 204 295 XP_001581087.1 protein of unknown function (DUF3447) [Trichomonas vaginalis G3] diamond 288 46.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;