RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493632" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA493632 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26855358 26855358 PRJNA493632_P_NODE_508141_length_251_cov_0.865169_g504702_i0 PRJNA493632 508141 251 0.865169 2.17157419 Porcine circovirus 2 85708 Viruses Viruses 50.8 3.83e-5   NR AIT52334.1 85708 g504702 i0 42 1.9003984063745 69 23 82.5 1 208 2 108 159 AIT52334.1 truncated ORF2 [Porcine circovirus 2] diamond 477 50.8 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae Circovirus Circovirus porcine2
31150434 31150434 PRJNA493632_P_NODE_565035_length_247_cov_0.885057_g561596_i0 PRJNA493632 565035 247 0.885057 2.18609079 Cressdnaviricota sp. 2748378 Viruses Viruses 73.9 1.05e-13   NR AWW06122.1 2748378 g561596 i0 41.5 0.995951417004049 82 46 97.2 1 8 247 154 235 AWW06122.1 MAG: capsid protein [Cressdnaviricota sp.] diamond 246 73.9 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
32857634 32857634 PRJNA493632_P_NODE_312760_length_291_cov_2.201835_g309321_i0 PRJNA493632 312760 291 2.201835 6.40733985 Parvoviridae sp. 1940570 Viruses Viruses 102 4.179999999999999e-23   NR QKE54888.1 1940570 g309321 i0 56.6 1.68041237113402 83 33 85.6 1 274 26 1 80 QKE54888.1 MAG: capsid protein [Parvoviridae sp.] diamond 489 102 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;