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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA493632" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 16 ✖

bioproject 1

  • PRJNA493632 · 16 ✖

analysis 1

  • diamond · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26949882 26949882 PRJNA493632_P_NODE_314182_length_291_cov_1.284404_g310743_i0 PRJNA493632 314182 291 1.284404 3.73761564 Mouse Intracisternal A-particle 11932 Viruses Viruses 60.1 5.14e-8   NR P31789.1 11932 g310743 i0 40.7 0.938144329896907 91 54 93.8 0 275 3 463 553 P31789.1 RecName: Full=Envelope glycoprotein; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Mouse Intracisternal A-particle] diamond 273 60.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Mouse Intracisternal A-particle
27139490 27139490 PRJNA493632_P_NODE_607802_length_244_cov_1.456140_g604361_i0 PRJNA493632 607802 244 1.45614 3.5529816 Retroviridae sp. 2681591 Viruses Viruses 119 5.32e-29   NR UGO47158.1 2681591 g604361 i0 70.4 7.90573770491803 81 24 99.6 0 1 243 451 531 UGO47158.1 MAG: envelope protein [Retroviridae sp.] diamond 1929 119 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
27361201 27361201 PRJNA493632_P_NODE_221423_length_331_cov_1.344961_g217988_i0 PRJNA493632 221423 331 1.344961 4.45182091 Mouse Intracisternal A-particle 11932 Viruses Viruses 91.3 9.56e-19   NR P31789.1 11932 g217988 i0 57.3 0.806646525679758 89 38 80.7 0 291 25 393 481 P31789.1 RecName: Full=Envelope glycoprotein; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Mouse Intracisternal A-particle] diamond 267 91.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Mouse Intracisternal A-particle
28055638 28055638 PRJNA493632_P_NODE_541485_length_249_cov_0.875000_g538046_i0 PRJNA493632 541485 249 0.875 2.17875 Lampyris noctiluca errantivirus 1 2552986 Viruses Viruses 120 1.32e-29   NR QBP37036.1 2552986 g538046 i0 74.4 1.97590361445783 82 21 98.8 0 3 248 316 397 QBP37036.1 putative RdRP [Lampyris noctiluca errantivirus 1] diamond 492 120 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Metaviridae Errantivirus Lampyris noctiluca errantivirus 1
28560985 28560985 PRJNA493632_P_NODE_220227_length_332_cov_0.895753_g216792_i0 PRJNA493632 220227 332 0.895753 2.97389996 Gammaretrovirus murleu 3428959 Viruses Viruses 72 1.18e-12   NR 6HWW_A 11786 g216792 i0 82 1.31927710843373 50 9 45.2 0 289 140 172 221 6HWW_A Chain A, Putative gag polyprotein [Murine leukemia virus] diamond 438 72 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29350365 29350365 PRJNA493632_P_NODE_541309_length_249_cov_0.875000_g537870_i0 PRJNA493632 541309 249 0.875 2.17875 Prosimian retrovirus 1 2821277 Viruses Viruses 48.5 3.81e-4   NR QTI96652.1 2821277 g537870 i0 48.9 1.10843373493976 47 24 56.6 0 28 168 630 676 QTI96652.1 pol [Prosimian retrovirus 1] diamond 276 48.5 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Prosimian retrovirus 1
29539548 29539548 PRJNA493632_P_NODE_319950_length_289_cov_3.009259_g316511_i0 PRJNA493632 319950 289 3.009259 8.69675851 Atlantic salmon swim bladder sarcoma virus 348296 Viruses Viruses 94.7 3.65e-20   NR YP_443922.1 348296 g316511 i0 60.3 1.45328719723183 73 29 75.8 0 288 70 929 1001 YP_443922.1 polyprotein [Atlantic salmon swim bladder sarcoma virus] diamond 420 94.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Atlantic salmon swim bladder sarcoma virus
29602505 29602505 PRJNA493632_P_NODE_420010_length_268_cov_1.482051_g416571_i0 PRJNA493632 420010 268 1.482051 3.97189668 Baboon endogenous virus strain M7 11764 Viruses Viruses 175 1.25e-48   NR YP_009109689.1 11764 g416571 i0 95.5 11.955223880597 89 4 99.6 0 1 267 1511 1599 YP_009109689.1 gag-pol precursor polyprotein [Baboon endogenous virus strain M7] diamond 3204 176 0.994318181818182 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus
29760545 29760545 PRJNA493632_P_NODE_332591_length_287_cov_0.836449_g329152_i0 PRJNA493632 332591 287 0.836449 2.40060863 Mouse Intracisternal A-particle 11932 Viruses Viruses 94.4 4.43e-20   NR P31789.1 11932 g329152 i0 63.6 0.804878048780488 77 28 80.5 0 4 234 476 552 P31789.1 RecName: Full=Envelope glycoprotein; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Mouse Intracisternal A-particle] diamond 231 94.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Mouse Intracisternal A-particle
29950244 29950244 PRJNA493632_P_NODE_349371_length_283_cov_1.447619_g345932_i0 PRJNA493632 349371 283 1.447619 4.09676177 Mouse Intracisternal A-particle 11932 Viruses Viruses 66.2 1.54e-10   NR P31790.1 11932 g345932 i0 58.1 0.657243816254417 62 26 65.7 0 19 204 1 62 P31790.1 RecName: Full=Intracisternal A-particle Gag-related polyprotein [Mouse Intracisternal A-particle] diamond 186 66.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Mouse Intracisternal A-particle
30613642 30613642 PRJNA493632_P_NODE_564513_length_247_cov_1.258621_g561074_i0 PRJNA493632 564513 247 1.258621 3.10879387 Mus dunni endogenous virus 75986 Viruses Viruses 43.1 0.0289   NR AAC31803.1 75986 g561074 i0 51.9 0.631578947368421 52 25 63.2 0 44 199 64 115 AAC31803.1 glycosylated gag protein [Mus dunni endogenous virus] diamond 156 43.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30929752 30929752 PRJNA493632_P_NODE_643834_length_242_cov_0.911243_g640393_i0 PRJNA493632 643834 242 0.911243 2.20520806 Golden hamster intracisternal A-particle H18 11752 Viruses Viruses 95.1 1.36e-20   NR P04026.1 11752 g640393 i0 52.6 0.966942148760331 78 37 96.7 0 2 235 113 190 P04026.1 RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] diamond 234 95.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Golden hamster intracisternal A-particle H18
31056399 31056399 PRJNA493632_P_NODE_435775_length_265_cov_0.802083_g432336_i0 PRJNA493632 435775 265 0.802083 2.12551995 Simian retrovirus 2 39068 Viruses Viruses 44.7 0.0103   NR P51517.2 39068 g432336 i0 39.4 1.49433962264151 66 34 67.9 2 254 75 1536 1601 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] diamond 396 44.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
31941279 31941279 PRJNA493632_P_NODE_114817_length_430_cov_0.843137_g111406_i0 PRJNA493632 114817 430 0.843137 3.6254891 Chinese hamster Intracisternal A-particle CHIAP34 11751 Viruses Viruses 80.9 1.35e-14   NR pir|D40899| 11751 g111406 i0 51.6 0.872093023255814 64 31 44.7 0 237 428 107 170 pir|D40899| pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34 [Chinese hamster Intracisternal A-particle CHIAP34] diamond 375 80.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Chinese hamster Intracisternal A-particle CHIAP34
32353202 32353202 PRJNA493632_P_NODE_557799_length_248_cov_0.880000_g554360_i0 PRJNA493632 557799 248 0.88 2.1824 Halyomorpha halys erranti-like virus 1 2950329 Viruses Viruses 83.6 1.7e-16   NR URQ09129.1 2950329 g554360 i0 56.5 0.834677419354839 69 30 83.5 0 2 208 663 731 URQ09129.1 replicase [Halyomorpha halys erranti-like virus 1] diamond 207 83.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Metaviridae   Halyomorpha halys erranti-like virus 1
32763233 32763233 PRJNA493632_P_NODE_46420_length_625_cov_0.920290_g43213_i0 PRJNA493632 46420 625 0.92029 5.7518125 Lampyris noctiluca errantivirus 1 2552986 Viruses Viruses 200 2.1099999999999993e-55   NR QBP37036.1 2552986 g43213 i0 70.6 0.6864 143 42 68.6 0 430 2 264 406 QBP37036.1 putative RdRP [Lampyris noctiluca errantivirus 1] diamond 429 200 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Metaviridae Errantivirus Lampyris noctiluca errantivirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;