RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA493632" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA493632 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26918508 26918508 PRJNA493632_P_NODE_643182_length_242_cov_0.911243_g639741_i0 PRJNA493632 643182 242 0.911243 2.20520806 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 116 3.36e-28   NR KOO24932.1 1460289 g639741 i0 65 0.991735537190083 80 28 99.2 0 240 1 409 488 KOO24932.1 beta-hexosaminidase subunit beta-like protein [Chrysochromulina tobinii] diamond 240 116 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29887235 29887235 PRJNA493632_P_NODE_612831_length_244_cov_0.900585_g609390_i0 PRJNA493632 612831 244 0.900585 2.1974274 Prymnesium parvum 97485 Haptophyta other_Eukaryota 79.3 1.75e-15   NR KAL1526508.1 97485 g609390 i0 54.8 3.40573770491803 62 28 76.2 0 192 7 205 266 KAL1526508.1 hypothetical protein AB1Y20_015218 [Prymnesium parvum] diamond 831 79.3 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31040596 31040596 PRJNA493632_P_NODE_402235_length_271_cov_7.469697_g398796_i0 PRJNA493632 402235 271 7.469697 20.24287887 root 1 Root_unresolved Root_unresolved 66.6 2.09e-10   NR KAJ1641544.1 483367 g398796 i0 46.2 10.5830258302583 78 39 86.3 2 241 8 323 397 KAJ1641544.1 hypothetical protein T492DRAFT_920404 [Pavlovales sp. CCMP2436] diamond 2868 66.6 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
32479757 32479757 PRJNA493632_P_NODE_698939_length_228_cov_2.167742_g695498_i0 PRJNA493632 698939 228 2.167742 4.94245176 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 72 1.45e-12   NR XP_005783348.1 280463 g695498 i0 40 1.97368421052632 75 45 98.7 0 226 2 37 111 XP_005783348.1 hypothetical protein EMIHUDRAFT_462781 [Emiliania huxleyi CCMP1516] diamond 450 72 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;