RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA493244" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493244 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27803161 27803161 PRJNA493244_P_NODE_1669704_length_207_cov_1.890411_g1646579_i0 PRJNA493244 1669704 207 1.890411 3.91315077 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 96.7 2.3700000000000003e-21   NR MFA5507039.1 3107663 g1646579 i0 80 0.869565217391304 60 12 87 0 26 205 311 370 MFA5507039.1 alanine--tRNA ligase [Vulcanimicrobiota bacterium] diamond 180 96.7 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30298116 30298116 PRJNA493244_P_NODE_1515892_length_239_cov_1.831461_g1492767_i0 PRJNA493244 1515892 239 1.831461 4.37719179 Candidatus Eremiobacteraceae bacterium 3069296 Bacteria Bacteria 97.1 2.2400000000000003e-21   NR HME82531.1 3069296 g1492767 i0 57.1 2.88702928870293 77 31 96.7 1 3 233 117 191 HME82531.1 hypothetical protein [Candidatus Eremiobacteraceae bacterium] diamond 690 97.1 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Candidatus Eremiobacterales Candidatus Eremiobacteraceae   Candidatus Eremiobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;