RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA493244" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493244 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27424315 27424315 PRJNA493244_P_NODE_1076863_length_374_cov_4.961661_g1053746_i0 PRJNA493244 1076863 374 4.961661 18.55661214 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 65.5 1.77e-9   NR VZI21838.1 99802 g1053746 i0 43.7 2.6951871657754 87 47 69 2 52 309 579 664 VZI21838.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 1008 65.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
29444615 29444615 PRJNA493244_P_NODE_1377170_length_274_cov_30.948357_g1354045_i0 PRJNA493244 1377170 274 30.948357 84.79849818 Calicophoron daubneyi 300641 Platyhelminthes Platyhelminthes 69.7 1.83e-11   NR CAL5133260.1 300641 g1354045 i0 61.5 1.16058394160584 52 19 55.8 1 122 274 180 231 CAL5133260.1 unnamed protein product [Calicophoron daubneyi] diamond 318 69.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi
31181996 31181996 PRJNA493244_P_NODE_210955_length_1155_cov_11.851920_g198766_i0 PRJNA493244 210955 1155 11.85192 136.889676 Trichobilharzia regenti 157069 Platyhelminthes Platyhelminthes 51.2 0.00863   NR CAH8859879.1 157069 g198766 i0 37.9 0.301298701298701 58 36 15.1 0 765 938 167 224 CAH8859879.1 unnamed protein product [Trichobilharzia regenti] diamond 348 51.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia regenti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;