RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA493244" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493244 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26902744 26902744 PRJNA493244_P_NODE_1429021_length_260_cov_4.788945_g1405896_i0 PRJNA493244 1429021 260 4.788945 12.451257 Asteroidea 7588 Echinodermata other_Eukaryota 92.8 4.26e-21   NR XP_033630180.1 7604 g1405896 i0 64.1 1.46538461538462 64 23 73.8 0 239 48 143 206 XP_033630180.1 60S ribosomal protein L10-like [Asterias rubens] diamond 381 92.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27044886 27044886 PRJNA493244_P_NODE_314162_length_956_cov_9.853631_g298290_i0 PRJNA493244 314162 956 9.853631 94.20071236 Diadema antillarum 105358 Echinodermata other_Eukaryota 66.2 7.36e-8   NR XP_071482999.1 105358 g298290 i0 45.6 0.988493723849372 68 37 21.3 0 479 276 1104 1171 XP_071482999.1 ribosome quality control complex subunit NEMF-like [Diadema antillarum] diamond 945 66.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
27598104 27598104 PRJNA493244_P_NODE_1663484_length_208_cov_1.306122_g1640359_i0 PRJNA493244 1663484 208 1.306122 2.71673376 Metazoa 33208 Echinodermata other_Eukaryota 47 7.36e-4   NR XP_038068403.1 46514 g1640359 i0 44.4 3.63461538461538 63 31 88 3 185 3 531 591 XP_038068403.1 pentatricopeptide repeat-containing protein 1, mitochondrial-like [Patiria miniata] diamond 756 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
29255132 29255132 PRJNA493244_P_NODE_1191989_length_331_cov_21.103704_g1168865_i0 PRJNA493244 1191989 331 21.103704 69.85326024 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 93.6 4.08e-22   NR KAJ8018211.1 206669 g1168865 i0 49.4 0.806646525679758 89 44 79.8 1 305 42 23 111 KAJ8018211.1 hypothetical protein HOLleu_43926 [Holothuria leucospilota] diamond 267 93.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;