RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA493234" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493234 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5558255 5558255 PRJNA493234_S_NODE_9765_length_313_cov_1.525000_g9672_i0 PRJNA493234 9765 313 1.525 4.77325 Myotis myotis 51298 Chordata Chordata 103 1.19e-25   NR KAF6324851.1 51298 g9672 i0 53.8 3.9297124600639 104 48 99.7 0 312 1 34 137 KAF6324851.1 hypothetical protein mMyoMyo1_008305 [Myotis myotis] diamond 1230 103 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
27092413 27092413 PRJNA493234_S_NODE_482_length_698_cov_1.923200_g393_i0 PRJNA493234 482 698 1.9232 13.423936 Chiroptera 9397 Chordata Chordata 50.1 0.002   NR KAF6402188.1 9407 g393 i0 58.3 0.502865329512894 36 15 15.5 0 411 304 145 180 KAF6402188.1 hypothetical protein HJG63_016008 [Rousettus aegyptiacus] diamond 351 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
27139268 27139268 PRJNA493234_S_NODE_2682_length_425_cov_1.349432_g2589_i0 PRJNA493234 2682 425 1.349432 5.735086 Myotis myotis 51298 Chordata Chordata 93.2 3.01e-21   NR KAF6355233.1 51298 g2589 i0 47.1 3.67764705882353 104 55 73.4 0 360 49 5 108 KAF6355233.1 hypothetical protein mMyoMyo1_011422 [Myotis myotis] diamond 1563 93.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
27708693 27708693 PRJNA493234_S_NODE_384_length_758_cov_1.486131_g300_i0 PRJNA493234 384 758 1.486131 11.26487298 Rhinolophus ferrumequinum 59479 Chordata Chordata 58.5 5.29e-7   NR KAF6364674.1 59479 g300 i0 54.2 0.189973614775726 48 22 19 0 758 615 69 116 KAF6364674.1 hypothetical protein mRhiFer1_009807 [Rhinolophus ferrumequinum] diamond 144 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
27771575 27771575 PRJNA493234_S_NODE_15044_length_272_cov_1.000000_g14951_i0 PRJNA493234 15044 272 1 2.72 Equus quagga 89248 Chordata Chordata 47.8 6.36e-4   NR XP_046505175.1 89248 g14951 i0 67.6 0.375 34 11 37.5 0 191 90 140 173 XP_046505175.1 uncharacterized protein LOC124232253 [Equus quagga] diamond 102 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus quagga
29507894 29507894 PRJNA493234_S_NODE_20190_length_245_cov_1.075581_g20097_i0 PRJNA493234 20190 245 1.075581 2.63517345 Crocuta crocuta 9678 Chordata Chordata 77.8 4.81e-16   NR KAF0870498.1 9678 g20097 i0 52.2 1.6530612244898 69 33 84.5 0 5 211 11 79 KAF0870498.1 LORF2 protein, partial [Crocuta crocuta] diamond 405 77.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
30771701 30771701 PRJNA493234_S_NODE_15074_length_271_cov_3.242424_g14981_i0 PRJNA493234 15074 271 3.242424 8.78696904 Bos mutus 72004 Chordata Chordata 92.4 1.49e-19   NR MXQ89774.1 72004 g14981 i0 100 0.44280442804428 40 0 44.3 0 116 235 71 110 MXQ89774.1 hypothetical protein [Bos mutus] diamond 120 92.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
31245484 31245484 PRJNA493234_S_NODE_19155_length_249_cov_0.863636_g19062_i0 PRJNA493234 19155 249 0.863636 2.15045364 Lynx pardinus 191816 Chordata Chordata 51.6 9.53e-6   NR VFV18845.1 191816 g19062 i0 42.4 0.795180722891566 66 35 75.9 1 197 9 20 85 VFV18845.1 Hypothetical predicted protein [Lynx pardinus] diamond 198 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
32888890 32888890 PRJNA493234_S_NODE_18040_length_253_cov_0.866667_g17947_i0 PRJNA493234 18040 253 0.866667 2.19266751 Capra hircus 9925 Chordata Chordata 97.8 1.84e-21   NR XDB62825.1 9925 g17947 i0 73.1 0.794466403162055 67 16 77.1 1 199 5 1415 1481 XDB62825.1 hypothetical protein ABFV05_016441 [Capra hircus] diamond 201 97.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;