RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA492406" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27392611 27392611 PRJNA492406_P_NODE_12343_length_355_cov_1.322695_g12044_i0 PRJNA492406 12343 355 1.322695 4.69556725 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 85.5 1.32e-16   NR HYG84357.1 2499141 g12044 i0 46.5 1.07323943661972 127 45 88.7 5 39 353 225 350 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 381 85.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30929491 30929491 PRJNA492406_P_NODE_24694_length_260_cov_1.443850_g24395_i0 PRJNA492406 24694 260 1.44385 3.75401 Haloferula sargassicola 490096 Bacteria Bacteria 85.9 1.96e-17   NR WP_353568968.1 490096 g24395 i0 54.7 0.738461538461539 64 29 73.8 0 192 1 1 64 WP_353568968.1 radical SAM protein [Haloferula sargassicola] diamond 192 85.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula sargassicola
31419566 31419566 PRJNA492406_P_NODE_12076_length_358_cov_1.396491_g11777_i0 PRJNA492406 12076 358 1.396491 4.99943778 Pseudomonadati 3379134 Bacteria Bacteria 191 2.5199999999999997e-56   NR MBL9213920.1 2006848 g11777 i0 78 46.9944134078212 118 26 98.9 0 356 3 213 330 MBL9213920.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Opitutaceae bacterium] diamond 16824 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;