RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA492406" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 23 ✖

analysis 1

  • diamond · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24678415 24678415 PRJNA492406_P_NODE_18540_length_290_cov_1.184332_g18241_i0 PRJNA492406 18540 290 1.184332 3.4345628 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 2.12e-29   NR TYZ62936.1 1485010 g18241 i0 57.3 11.8965517241379 96 41 99.3 0 2 289 40 135 TYZ62936.1 hypothetical protein PybrP1_003316 [[Pythium] brassicae (nom. inval.)] diamond 3450 115 0.991304347826087 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
26633231 26633231 PRJNA492406_P_NODE_31041_length_243_cov_0.905882_g30742_i0 PRJNA492406 31041 243 0.905882 2.20129326 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.51e-5   NR XP_024574507.1 4781 g30742 i0 48.3 1.67901234567901 58 27 71.6 2 5 178 1351 1405 XP_024574507.1 Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Plasmopara halstedii] diamond 408 52.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
26664638 26664638 PRJNA492406_P_NODE_30601_length_244_cov_0.871345_g30302_i0 PRJNA492406 30601 244 0.871345 2.1260818 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 108 3.63e-25   NR TMW64793.1 41045 g30302 i0 60 0.983606557377049 80 31 98.4 1 243 4 766 844 TMW64793.1 hypothetical protein Poli38472_008960 [Pythium oligandrum] diamond 240 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27171050 27171050 PRJNA492406_P_NODE_26682_length_251_cov_0.865169_g26383_i0 PRJNA492406 26682 251 0.865169 2.17157419 Phytophthora palmivora 4796 SAR_Eukaryotes SAR_Eukaryotes 53.1 9.03e-6   NR POM60098.1 4796 g26383 i0 59.5 0.442231075697211 37 13 44.2 1 2 112 14 48 POM60098.1 hypothetical protein PHPALM_31083 [Phytophthora palmivora] diamond 111 53.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
27471733 27471733 PRJNA492406_P_NODE_21883_length_274_cov_1.532338_g21584_i0 PRJNA492406 21883 274 1.532338 4.19860612 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 108 2.95e-25   NR XP_067820228.1 4779 g21584 i0 55.6 12.8102189781022 90 39 98.5 1 272 3 402 490 XP_067820228.1 hypothetical protein CCR75_004221 [Bremia lactucae] diamond 3510 109 0.990825688073395 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
27487212 27487212 PRJNA492406_P_NODE_20343_length_282_cov_1.263158_g20044_i0 PRJNA492406 20343 282 1.263158 3.56210556 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.64e-5   NR KAG9412244.1 112091 g20044 i0 34.6 0.861702127659574 81 50 86.2 2 248 6 110 187 KAG9412244.1 hypothetical protein AC1031_015185 [Aphanomyces cochlioides] diamond 243 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
28860775 28860775 PRJNA492406_P_NODE_31408_length_242_cov_0.911243_g31109_i0 PRJNA492406 31408 242 0.911243 2.20520806 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 48.9 2.5e-4   NR KAG2817228.1 29920 g31109 i0 47.7 3.07438016528926 44 23 54.5 0 139 8 616 659 KAG2817228.1 hypothetical protein PC112_g13146 [Phytophthora cactorum] diamond 744 49.3 0.991886409736308 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
29113570 29113570 PRJNA492406_P_NODE_21888_length_274_cov_1.527363_g21589_i0 PRJNA492406 21888 274 1.527363 4.18497462 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 100 1.95e-22   NR DBA04368.1 4803 g21589 i0 50 9.6021897810219 90 45 98.5 0 272 3 1244 1333 DBA04368.1 TPA: hypothetical protein N0F65_002130 [Lagenidium giganteum] diamond 2631 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29350162 29350162 PRJNA492406_P_NODE_6269_length_479_cov_2.007389_g5970_i0 PRJNA492406 6269 479 2.007389 9.61539331 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 101 1.84e-21   NR KAF1329144.1 82926 g5970 i0 36.9 2.01043841336117 160 87 99.6 3 3 479 100 246 KAF1329144.1 Major vault protein, partial [Globisporangium splendens] diamond 963 101 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
29428993 29428993 PRJNA492406_P_NODE_26309_length_252_cov_0.977654_g26010_i0 PRJNA492406 26309 252 0.977654 2.46368808 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 85.5 2.02e-17   NR CAI5746136.1 86335 g26010 i0 50.6 4.07142857142857 85 40 98.8 2 4 252 92 176 CAI5746136.1 unnamed protein product [Peronospora destructor] diamond 1026 85.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
29428995 29428995 PRJNA492406_P_NODE_28929_length_247_cov_0.885057_g28630_i0 PRJNA492406 28929 247 0.885057 2.18609079 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 157 3.2299999999999996e-45   NR DBA03690.1 4803 g28630 i0 93.8 4.91902834008097 81 5 98.4 0 245 3 46 126 DBA03690.1 TPA: hypothetical protein N0F65_004107 [Lagenidium giganteum] diamond 1215 157 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29492320 29492320 PRJNA492406_P_NODE_21770_length_275_cov_1.153465_g21471_i0 PRJNA492406 21770 275 1.153465 3.17202875 root 1 Root_unresolved Root_unresolved 117 3.76e-28   NR RHY29296.1 157072 g21471 i0 66.3 8.06181818181818 80 27 87.3 0 20 259 489 568 RHY29296.1 hypothetical protein DYB32_005265 [Aphanomyces invadans] diamond 2217 118 0.991525423728814 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
30092217 30092217 PRJNA492406_P_NODE_27112_length_250_cov_0.870056_g26813_i0 PRJNA492406 27112 250 0.870056 2.17514 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 116 9.41e-29   NR KAF0687225.1 120398 g26813 i0 70.7 8.268 75 22 90 0 24 248 26 100 KAF0687225.1 hypothetical protein As57867_020919 [Aphanomyces stellatus] diamond 2067 117 0.991452991452991 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30724272 30724272 PRJNA492406_P_NODE_5514_length_511_cov_1.648402_g5216_i0 PRJNA492406 5514 511 1.648402 8.42333422 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 175 5.03e-53   NR TYZ60753.1 1485010 g5216 i0 66.2 8.54207436399217 133 44 78.1 1 22 420 4 135 TYZ60753.1 hypothetical protein PybrP1_007794 [[Pythium] brassicae (nom. inval.)] diamond 4365 176 0.994318181818182 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
30771669 30771669 PRJNA492406_P_NODE_19134_length_287_cov_2.065421_g18835_i0 PRJNA492406 19134 287 2.065421 5.92775827 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0431   NR KAH9106211.1 100861 g18835 i0 28.4 0.700348432055749 67 45 70 1 248 48 51 114 KAH9106211.1 hypothetical protein AeMF1_018127 [Aphanomyces euteiches] diamond 201 42.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30834699 30834699 PRJNA492406_P_NODE_31494_length_242_cov_0.911243_g31195_i0 PRJNA492406 31494 242 0.911243 2.20520806 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00405   NR GLE07382.1 114742 g31195 i0 47.5 1.46280991735537 59 29 70.7 1 175 5 282 340 GLE07382.1 hypothetical protein PINS_up017544 [Pythium insidiosum] diamond 354 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31293046 31293046 PRJNA492406_P_NODE_31815_length_241_cov_1.470238_g31516_i0 PRJNA492406 31815 241 1.470238 3.54327358 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 90.9 4.18e-19   NR OQR84160.1 1202772 g31516 i0 57.3 4.50622406639004 89 29 99.6 1 2 241 368 456 OQR84160.1 major vault protein [Achlya hypogyna] diamond 1086 91.7 0.991275899672846 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
31640939 31640939 PRJNA492406_P_NODE_17816_length_295_cov_2.454955_g17517_i0 PRJNA492406 17816 295 2.454955 7.24211725 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.75e-16   NR RHY03263.1 112090 g17517 i0 43.3 4.63728813559322 90 51 91.5 0 271 2 22 111 RHY03263.1 hypothetical protein DYB36_008331, partial [Aphanomyces astaci] diamond 1368 81.3 0.990159901599016 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
31719932 31719932 PRJNA492406_P_NODE_7777_length_435_cov_1.696133_g7478_i0 PRJNA492406 7777 435 1.696133 7.37817855 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 57.4 1.53e-6   NR CCA27070.1 890382 g7478 i0 35.6 0.696551724137931 101 62 69.7 3 431 129 185 282 CCA27070.1 voltagedependent anionselective channel protein puta [Albugo laibachii Nc14] diamond 303 57.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
31783029 31783029 PRJNA492406_P_NODE_30677_length_243_cov_1.800000_g30378_i0 PRJNA492406 30677 243 1.8 4.374 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 134 9.8e-37   NR KAJ0390552.1 114742 g30378 i0 82.5 3.95061728395062 80 14 98.8 0 241 2 113 192 KAJ0390552.1 hypothetical protein ATCC90586_011289 [Pythium insidiosum] diamond 960 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32083890 32083890 PRJNA492406_P_NODE_20978_length_279_cov_1.135922_g20679_i0 PRJNA492406 20978 279 1.135922 3.16922238 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 70.1 1.36e-11   NR KAF1330486.1 82926 g20679 i0 59.6 6.75268817204301 52 21 55.9 0 162 7 221 272 KAF1330486.1 Heterogeneous nuclear ribonucleoprotein 1-like isoform x1, partial [Globisporangium splendens] diamond 1884 70.5 0.994326241134752 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
32179038 32179038 PRJNA492406_P_NODE_30798_length_243_cov_1.317647_g30499_i0 PRJNA492406 30798 243 1.317647 3.20188221 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 144 9.7e-38   NR TMW60059.1 41045 g30499 i0 83.8 3.95061728395062 80 13 98.8 0 242 3 96 175 TMW60059.1 hypothetical protein Poli38472_000101 [Pythium oligandrum] diamond 960 145 0.993103448275862 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32447868 32447868 PRJNA492406_P_NODE_5759_length_500_cov_1.894614_g5460_i0 PRJNA492406 5759 500 1.894614 9.47307 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 226 1.6499999999999998e-72   NR KAF0710955.1 112090 g5460 i0 69.1 4.896 162 50 97.2 0 10 495 25 186 KAF0710955.1 hypothetical protein AaE_012304 [Aphanomyces astaci] diamond 2448 226 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;