RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA492406" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27013081 27013081 PRJNA492406_P_NODE_11742_length_363_cov_1.362069_g11443_i0 PRJNA492406 11742 363 1.362069 4.94431047 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 87.8 2.38e-17   NR ETO24785.1 46433 g11443 i0 37.8 2 119 68 98.3 2 2 358 118 230 ETO24785.1 P-type ATPase, partial [Reticulomyxa filosa] diamond 726 87.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28150441 28150441 PRJNA492406_P_NODE_20325_length_282_cov_1.320574_g20026_i0 PRJNA492406 20325 282 1.320574 3.72401868 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 118 1.79e-28   NR ETO10243.1 46433 g20026 i0 54.4 1.91489361702128 90 41 95.7 0 1 270 495 584 ETO10243.1 hypothetical protein RFI_27134, partial [Reticulomyxa filosa] diamond 540 118 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29003217 29003217 PRJNA492406_P_NODE_27288_length_250_cov_0.870056_g26989_i0 PRJNA492406 27288 250 0.870056 2.17514 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 56.6 5.3e-7   NR ETO35324.1 46433 g26989 i0 35 1.92 80 50 93.6 1 235 2 566 645 ETO35324.1 hypothetical protein RFI_01738 [Reticulomyxa filosa] diamond 480 56.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29397634 29397634 PRJNA492406_P_NODE_17189_length_301_cov_2.004386_g16890_i0 PRJNA492406 17189 301 2.004386 6.03320186 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.34e-16   NR ETO22036.1 46433 g16890 i0 40 3.69767441860465 90 54 89.7 0 276 7 177 266 ETO22036.1 hypothetical protein RFI_15166, partial [Reticulomyxa filosa] diamond 1113 84.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30771672 30771672 PRJNA492406_P_NODE_20694_length_280_cov_1.396135_g20395_i0 PRJNA492406 20694 280 1.396135 3.909178 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 131 3.38e-33   NR ETO35216.1 46433 g20395 i0 63 0.985714285714286 92 34 98.6 0 1 276 468 559 ETO35216.1 coagulation factor 5/8 type domain-containing protein [Reticulomyxa filosa] diamond 276 131 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;