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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA492406" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14480968 14480968 PRJNA492406_P_NODE_16172_length_311_cov_2.563025_g15873_i0 PRJNA492406 16172 311 2.563025 7.97100775 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 123 1.24e-33   NR XP_035667477.1 7739 g15873 i0 64.3 8.12218649517685 98 33 93.6 2 309 19 36 132 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 2526 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
15755065 15755065 PRJNA492406_P_NODE_20793_length_279_cov_2.655340_g20494_i0 PRJNA492406 20793 279 2.65534 7.4083986 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 1.88e-35   NR CBY35623.1 34765 g20494 i0 68.8 27.989247311828 93 27 100 1 1 279 373 463 CBY35623.1 unnamed protein product [Oikopleura dioica] diamond 7809 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
17030155 17030155 PRJNA492406_P_NODE_9694_length_394_cov_3.311526_g9395_i0 PRJNA492406 9694 394 3.311526 13.04741244 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.9 2.36e-12   NR CBY20253.1 34765 g9395 i0 53.7 1.54568527918782 67 31 51 0 392 192 553 619 CBY20253.1 unnamed protein product [Oikopleura dioica] diamond 609 74.3 0.994616419919246 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
26871272 26871272 PRJNA492406_P_NODE_31701_length_241_cov_2.625000_g31402_i0 PRJNA492406 31701 241 2.625 6.32625 Opisthokonta 33154 Chordata Chordata 47.8 6.15e-4   NR XP_062828856.1 28377 g31402 i0 54.1 6.33609958506224 37 17 46.1 0 35 145 193 229 XP_062828856.1 zinc transporter SLC39A7 isoform X2 [Anolis carolinensis] diamond 1527 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
26981450 26981450 PRJNA492406_P_NODE_12602_length_352_cov_1.103943_g12303_i0 PRJNA492406 12602 352 1.103943 3.88587936 Manis pentadactyla 143292 Chordata Chordata 48.1 0.00156   NR XP_036738353.2 143292 g12303 i0 34 2.05397727272727 103 57 78.4 3 314 39 89 191 XP_036738353.2 zinc finger and BTB domain-containing protein 42 isoform X1 [Manis pentadactyla] diamond 723 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla
27440347 27440347 PRJNA492406_P_NODE_20303_length_282_cov_1.416268_g20004_i0 PRJNA492406 20303 282 1.416268 3.99387576 Metazoa 33208 Chordata Chordata 55.1 2.76e-6   NR XP_020827376.1 38626 g20004 i0 39.8 7.21276595744681 83 47 86.2 3 260 18 924 1005 XP_020827376.1 complement factor H-like isoform X1 [Phascolarctos cinereus] diamond 2034 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
28387216 28387216 PRJNA492406_P_NODE_31006_length_243_cov_0.905882_g30707_i0 PRJNA492406 31006 243 0.905882 2.20129326 Opisthokonta 33154 Chordata Chordata 95.5 1.01e-20   NR XP_019618609.1 7741 g30707 i0 57.7 19.9506172839506 78 33 96.3 0 2 235 1282 1359 XP_019618609.1 PREDICTED: multidrug resistance-associated protein 1-like [Branchiostoma belcheri] diamond 4848 95.9 0.995828988529718 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28419050 28419050 PRJNA492406_P_NODE_6666_length_466_cov_5.791349_g6367_i0 PRJNA492406 6666 466 5.791349 26.98768634 Metazoa 33208 Chordata Chordata 142 1.97e-39   NR XP_067960906.1 7769 g6367 i0 51.3 7.68025751072961 152 70 95.9 2 15 461 21 171 XP_067960906.1 small ribosomal subunit protein eS8 [Myxine glutinosa] diamond 3579 142 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28797517 28797517 PRJNA492406_P_NODE_26467_length_251_cov_1.331461_g26168_i0 PRJNA492406 26467 251 1.331461 3.34196711 Metazoa 33208 Chordata Chordata 97.1 3.17e-21   NR XP_069082830.1 8319 g26168 i0 57.1 11.1035856573705 77 33 92 0 232 2 118 194 XP_069082830.1 NADPH--cytochrome P450 reductase isoform X3 [Pleurodeles waltl] diamond 2787 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28860771 28860771 PRJNA492406_P_NODE_16288_length_310_cov_2.151899_g15989_i0 PRJNA492406 16288 310 2.151899 6.6708869 Metazoa 33208 Chordata Chordata 102 3.98e-24   NR XP_049994965.1 100897 g15989 i0 53.5 13.7516129032258 101 47 97.7 0 310 8 121 221 XP_049994965.1 60S ribosomal protein L23a-like [Alexandromys fortis] diamond 4263 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Alexandromys Alexandromys fortis
28923886 28923886 PRJNA492406_P_NODE_32668_length_231_cov_2.158228_g32369_i0 PRJNA492406 32668 231 2.158228 4.98550668 root 1 Root_unresolved Root_unresolved 69.3 1.39e-11   NR XP_019618386.1 7741 g32369 i0 50.7 4.80519480519481 69 27 80.5 3 2 187 546 614 XP_019618386.1 PREDICTED: fibrillin-2-like isoform X48 [Branchiostoma belcheri] diamond 1110 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29003208 29003208 PRJNA492406_P_NODE_19408_length_286_cov_1.446009_g19109_i0 PRJNA492406 19408 286 1.446009 4.13558574 Polypterus senegalus 55291 Chordata Chordata 123 1.3199999999999999e-31   NR KAG2461710.1 55291 g19109 i0 61.3 6.82867132867133 93 36 97.6 0 3 281 217 309 KAG2461710.1 RL5 protein, partial [Polypterus senegalus] diamond 1953 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29255118 29255118 PRJNA492406_P_NODE_31289_length_242_cov_1.414201_g30990_i0 PRJNA492406 31289 242 1.414201 3.42236642 Cricetulus griseus 10029 Chordata Chordata 47.8 6.33e-4   NR ERE68358.1 10029 g30990 i0 45.6 1.68595041322314 68 35 83.1 2 38 238 94 160 ERE68358.1 ankyrin repeat and SOCS box protein 16 [Cricetulus griseus] diamond 408 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
29271138 29271138 PRJNA492406_P_NODE_22449_length_271_cov_1.823232_g22150_i0 PRJNA492406 22449 271 1.823232 4.94095872 root 1 Root_unresolved Root_unresolved 86.3 1.43e-17   NR CAH1272148.1 7740 g22150 i0 60.3 11.2915129151292 78 30 85.2 1 269 39 298 375 CAH1272148.1 SERPINB9 [Branchiostoma lanceolatum] diamond 3060 87 0.991954022988506 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29681453 29681453 PRJNA492406_P_NODE_23810_length_264_cov_1.984293_g23511_i0 PRJNA492406 23810 264 1.984293 5.23853352 Opisthokonta 33154 Chordata Chordata 99.4 1.75e-22   NR KYO31711.1 8496 g23511 i0 57.6 35.7840909090909 85 34 96.6 1 2 256 95 177 KYO31711.1 60S acidic ribosomal protein P0 [Alligator mississippiensis] diamond 9447 100 0.994 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
29776423 29776423 PRJNA492406_P_NODE_22791_length_269_cov_3.397959_g22492_i0 PRJNA492406 22791 269 3.397959 9.14050971 Anura 8342 Chordata Chordata 45.4 0.00577   NR XP_040198421.1 8407 g22492 i0 39.2 1.66171003717472 74 43 80.3 2 230 15 595 668 XP_040198421.1 furin [Rana temporaria] diamond 447 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
30013338 30013338 PRJNA492406_P_NODE_18731_length_289_cov_1.342593_g18432_i0 PRJNA492406 18731 289 1.342593 3.88009377 Eleutherodactylus coqui 57060 Chordata Chordata 45.8 0.00546   NR XP_066462105.1 57060 g18432 i0 37.3 1.14186851211073 51 32 52.9 0 281 129 236 286 XP_066462105.1 sacsin-like [Eleutherodactylus coqui] diamond 330 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
30298066 30298066 PRJNA492406_P_NODE_28912_length_247_cov_0.885057_g28613_i0 PRJNA492406 28912 247 0.885057 2.18609079 Hypanus sabinus 79690 Chordata Chordata 43.5 0.0213   NR XP_059823631.1 79690 g28613 i0 40 0.97165991902834 40 24 48.6 0 128 247 558 597 XP_059823631.1 IQ calmodulin-binding motif-containing protein 1 isoform X1 [Hypanus sabinus] diamond 240 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
30329690 30329690 PRJNA492406_P_NODE_19632_length_285_cov_1.448113_g19333_i0 PRJNA492406 19632 285 1.448113 4.12712205 Muntiacus reevesi 9886 Chordata Chordata 45.1 0.0096   NR KAB0380880.1 9886 g19333 i0 85.7 0.221052631578947 21 3 22.1 0 167 105 1120 1140 KAB0380880.1 hypothetical protein FD755_008664, partial [Muntiacus reevesi] diamond 63 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
30518732 30518732 PRJNA492406_P_NODE_13633_length_339_cov_2.075188_g13334_i0 PRJNA492406 13633 339 2.075188 7.03488732 Callorhinchus milii 7868 Chordata Chordata 67.8 1.26e-10   NR XP_007894923.1 7868 g13334 i0 35.8 5.43362831858407 106 61 93.8 3 14 331 78 176 XP_007894923.1 gamma-glutamyl hydrolase [Callorhinchus milii] diamond 1842 67.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
30518755 30518755 PRJNA492406_P_NODE_5073_length_532_cov_1.366013_g4778_i0 PRJNA492406 5073 532 1.366013 7.26718916 Lacerta agilis 80427 Chordata Chordata 189 5.68e-56   NR XP_032992740.1 80427 g4778 i0 53.6 1.02067669172932 181 80 99.8 3 532 2 127 307 XP_032992740.1 LOW QUALITY PROTEIN: cathepsin L1-like [Lacerta agilis] diamond 543 189 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Lacerta Lacerta agilis
30534710 30534710 PRJNA492406_P_NODE_27853_length_249_cov_0.875000_g27554_i0 PRJNA492406 27853 249 0.875 2.17875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.8 9.79e-7   NR XP_055985319.1 62283 g27554 i0 36.9 3.83132530120482 65 41 78.3 0 32 226 526 590 XP_055985319.1 deleted in lung and esophageal cancer protein 1 [Sorex fumeus] diamond 954 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex fumeus
30644944 30644944 PRJNA492406_P_NODE_24133_length_263_cov_1.094737_g23834_i0 PRJNA492406 24133 263 1.094737 2.87915831 Mauremys mutica 74926 Chordata Chordata 43.5 0.0115   NR KAH1178546.1 74926 g23834 i0 41.9 0.707224334600761 62 33 69.6 2 33 215 34 93 KAH1178546.1 hypothetical protein KIL84_012248 [Mauremys mutica] diamond 186 43.5 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica
30914057 30914057 PRJNA492406_P_NODE_29794_length_245_cov_0.895349_g29495_i0 PRJNA492406 29794 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 1.61e-5   NR NXF34256.1 48426 g29495 i0 46 3.61224489795918 50 27 61.2 0 245 96 61 110 NXF34256.1 MSS4 factor [Nyctibius bracteatus] diamond 885 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Caprimulgiformes Nyctibiidae Nyctibius Nyctibius bracteatus
30992770 30992770 PRJNA492406_P_NODE_29374_length_246_cov_0.890173_g29075_i0 PRJNA492406 29374 246 0.890173 2.18982558 Gallus gallus 9031 Chordata Chordata 43.5 0.0162   NR NP_001384177.1 9031 g29075 i0 39.6 2.34146341463415 48 29 58.5 0 148 5 3 50 NP_001384177.1 rho-related GTP-binding protein RhoJ isoform 2 [Gallus gallus] diamond 576 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
31561942 31561942 PRJNA492406_P_NODE_19156_length_287_cov_1.733645_g18857_i0 PRJNA492406 19156 287 1.733645 4.97556115 Bufotes viridis 30338 Chordata Chordata 80.5 3.94e-16   NR CAK8641430.1 30338 g18857 i0 49.4 2.0383275261324 89 43 92 2 286 23 133 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 585 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31957287 31957287 PRJNA492406_P_NODE_29437_length_246_cov_0.890173_g29138_i0 PRJNA492406 29437 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 48.9 2.63e-4   NR NP_035475.2 10090 g29138 i0 36.4 3.54878048780488 77 43 89 3 222 4 424 498 NP_035475.2 E-selectin precursor [Mus musculus] diamond 873 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32384314 32384314 PRJNA492406_P_NODE_15379_length_320_cov_1.072874_g15080_i0 PRJNA492406 15379 320 1.072874 3.4331968 Pleurodeles waltl 8319 Chordata Chordata 75.9 1.36e-13   NR KAJ1172674.1 8319 g15080 i0 37.3 1.9125 102 64 95.6 0 14 319 95 196 KAJ1172674.1 hypothetical protein NDU88_004518, partial [Pleurodeles waltl] diamond 612 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32447859 32447859 PRJNA492406_P_NODE_27759_length_249_cov_0.875000_g27460_i0 PRJNA492406 27759 249 0.875 2.17875 Crotalus adamanteus 8729 Chordata Chordata 45.1 0.00615   NR KAK9398265.1 8729 g27460 i0 38.3 0.72289156626506 60 37 72.3 0 182 3 190 249 KAK9398265.1 importin-4-like [Crotalus adamanteus] diamond 180 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
32463765 32463765 PRJNA492406_P_NODE_30059_length_245_cov_0.872093_g29760_i0 PRJNA492406 30059 245 0.872093 2.13662785 Metazoa 33208 Chordata Chordata 132 4.73e-36   NR XP_035694028.1 7739 g29760 i0 77.5 3.91836734693878 80 18 98 0 4 243 1 80 XP_035694028.1 60S ribosomal protein L8-like [Branchiostoma floridae] diamond 960 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32479480 32479480 PRJNA492406_P_NODE_28479_length_247_cov_2.183908_g28180_i0 PRJNA492406 28479 247 2.183908 5.39425276 Pseudophryne corroboree 495146 Chordata Chordata 51.2 3.7e-5   NR XP_063787574.1 495146 g28180 i0 43.4 1.80971659919028 76 39 92.3 2 6 233 219 290 XP_063787574.1 F-box/LRR-repeat protein 12 [Pseudophryne corroboree] diamond 447 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
32826084 32826084 PRJNA492406_P_NODE_21760_length_275_cov_1.257426_g21461_i0 PRJNA492406 21760 275 1.257426 3.4579215 Mauremys mutica 74926 Chordata Chordata 57 5.4e-7   NR XP_044884910.1 74926 g21461 i0 35.2 0.96 88 45 85.1 3 268 35 1080 1165 XP_044884910.1 complement factor H-like isoform X4 [Mauremys mutica] diamond 264 57 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;