RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA492406" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28308231 28308231 PRJNA492406_P_NODE_24786_length_260_cov_0.914439_g24487_i0 PRJNA492406 24786 260 0.914439 2.3775414 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 127 1.09e-31   NR KAG7364831.1 303405 g24487 i0 73.5 11.5038461538462 83 22 95.8 0 2 250 2029 2111 KAG7364831.1 methionine synthase [Nitzschia inconspicua] diamond 2991 127 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
28876403 28876403 PRJNA492406_P_NODE_16308_length_310_cov_1.696203_g16009_i0 PRJNA492406 16308 310 1.696203 5.2582293 Stephanodiscus triporus 2934178 SAR_Eukaryotes SAR_Eukaryotes 50.1 2.32e-4   NR KAL3772705.1 2934178 g16009 i0 60.6 0.319354838709677 33 13 31.9 0 306 208 1404 1436 KAL3772705.1 hypothetical protein ACHAW5_002680 [Stephanodiscus triporus] diamond 99 50.1 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus triporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;