RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA492363" and tax_phylum = "Elusimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492363 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32952647 32952647 PRJNA492363_S_NODE_93306_length_205_cov_0.888889_g92485_i0 PRJNA492363 93306 205 0.888889 1.82222245 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 119 2.25e-29   NR MDP3541146.1 2030800 g92485 i0 91.2 2.98536585365854 68 6 99.5 0 2 205 537 604 MDP3541146.1 DUF87 domain-containing protein [Elusimicrobiota bacterium] diamond 612 119 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
32969829 32969829 PRJNA492363_S_NODE_97106_length_203_cov_0.901408_g96285_i0 PRJNA492363 97106 203 0.901408 1.82985824 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 103 4.3500000000000006e-27   NR MBI4387298.1 2030800 g96285 i0 76.6 2.86699507389163 64 15 94.6 0 202 11 10 73 MBI4387298.1 helix-turn-helix transcriptional regulator [Elusimicrobiota bacterium] diamond 582 103 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
33071882 33071882 PRJNA492363_S_NODE_9381_length_313_cov_1.015873_g8560_i0 PRJNA492363 9381 313 1.015873 3.17968249 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 160 5.089999999999998e-43   NR MCM2305374.1 2030800 g8560 i0 77.7 3.94888178913738 103 23 98.7 0 311 3 495 597 MCM2305374.1 acyltransferase domain-containing protein [Elusimicrobiota bacterium] diamond 1236 160 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;