RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA492280" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492280 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28513573 28513573 PRJNA492280_P_NODE_30607_length_151_cov_4.017544_g30500_i0 PRJNA492280 30607 151 4.017544 6.06649144 Pseudomonadati 3379134 Bacteria Bacteria 80.5 5.03e-16   NR MDH3290884.1 2026742 g30500 i0 59.7 9.85430463576159 62 12 97.4 1 149 3 254 315 MDH3290884.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Gemmatimonadota bacterium] diamond 1488 80.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29113567 29113567 PRJNA492280_P_NODE_33308_length_150_cov_4.176991_g33201_i0 PRJNA492280 33308 150 4.176991 6.2654865 Pseudomonadati 3379134 Bacteria Bacteria 59.3 1.03e-8   NR NNE09753.1 2026742 g33201 i0 57.4 1.88 47 20 94 0 4 144 19 65 NNE09753.1 VOC family protein [Gemmatimonadota bacterium] diamond 282 59.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30282350 30282350 PRJNA492280_P_NODE_16172_length_164_cov_4.181102_g16065_i0 PRJNA492280 16172 164 4.181102 6.85700728 Gemmatimonas 173479 Bacteria Bacteria 48.1 1.61e-4   NR WP_373069465.1 1962908 g16065 i0 95.8 2.19512195121951 24 1 43.9 0 89 160 1189 1212 WP_373069465.1 cell surface protein SprA [Gemmatimonas sp.] diamond 360 48.5 0.991752577319588 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;