RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA492280" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492280 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28055389 28055389 PRJNA492280_P_NODE_31325_length_151_cov_3.236842_g31218_i0 PRJNA492280 31325 151 3.236842 4.88763142 Desulfurellales bacterium 2482794 Bacteria Bacteria 56.2 1.77e-7   NR TXH53030.1 2482794 g31218 i0 70.8 0.95364238410596 48 13 93.4 1 6 146 151 198 TXH53030.1 MAG: hypothetical protein E6Q97_14060 [Desulfurellales bacterium] diamond 144 56.2 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
30692639 30692639 PRJNA492280_P_NODE_15533_length_164_cov_4.401575_g15426_i0 PRJNA492280 15533 164 4.401575 7.218583 Bacteria 2 Bacteria Bacteria 58.2 1.31e-8   NR PUB99708.1 210 g15426 i0 100 1.82926829268293 25 0 45.7 0 75 1 127 151 PUB99708.1 hypothetical protein C2S07_01860, partial [Helicobacter pylori] diamond 300 58.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;