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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA492280" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492280 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9379726 9379726 PRJNA492280_P_NODE_13148_length_164_cov_5.661417_g13041_i0 PRJNA492280 13148 164 5.661417 9.28472388 Micavibrio sp. 2024841 Bacteria Bacteria 90.1 1.48e-19   NR HEU4837819.1 2024841 g13041 i0 75 1.09756097560976 60 7 95.1 1 1 156 172 231 HEU4837819.1 phosphoserine transaminase [Micavibrio sp.] diamond 180 90.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
26743844 26743844 PRJNA492280_P_NODE_33221_length_150_cov_4.300885_g33114_i0 PRJNA492280 33221 150 4.300885 6.4513275 Bacteria 2 Bacteria Bacteria 64.3 2.48e-10   NR MCO5142205.1 2599941 g33114 i0 46.7 3.08 75 14 98 2 2 148 439 513 MCO5142205.1 glycosyltransferase family 39 protein [Oligoflexia bacterium] diamond 462 64.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
27171025 27171025 PRJNA492280_P_NODE_18702_length_164_cov_3.551181_g18595_i0 PRJNA492280 18702 164 3.551181 5.82393684 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 51.6 4.92e-6   NR HEY8279811.1 3034175 g18595 i0 60.5 0.786585365853659 43 17 78.7 0 133 5 84 126 HEY8279811.1 hypothetical protein [Bdellovibrionota bacterium] diamond 129 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27266097 27266097 PRJNA492280_P_NODE_17883_length_164_cov_3.732283_g17776_i0 PRJNA492280 17883 164 3.732283 6.12094412 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 40 0.0251   NR MCM2348416.1 2081706 g17776 i0 63.3 0.548780487804878 30 10 54.9 1 94 5 42 70 MCM2348416.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 90 40 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27297654 27297654 PRJNA492280_P_NODE_22303_length_164_cov_2.952756_g22196_i0 PRJNA492280 22303 164 2.952756 4.84251984 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 50.4 7.53e-6   NR MBY0516280.1 2081706 g22196 i0 91.7 0.439024390243902 24 2 43.9 0 91 162 9 32 MBY0516280.1 SufE family protein [Bacteriovoracaceae bacterium] diamond 72 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28387211 28387211 PRJNA492280_P_NODE_21226_length_164_cov_3.118110_g21119_i0 PRJNA492280 21226 164 3.11811 5.1137004 Bacteria 2 Bacteria Bacteria 48.5 1.14e-4   NR HRK07011.1 2026715 g21119 i0 91.7 8.78048780487805 24 2 43.9 0 74 3 47 70 HRK07011.1 flagellar basal body P-ring protein FlgI [Pseudobdellovibrionaceae bacterium] diamond 1440 48.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29223980 29223980 PRJNA492280_P_NODE_22569_length_164_cov_2.921260_g22462_i0 PRJNA492280 22569 164 2.92126 4.7908664 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 41.2 0.046   NR HLT23269.1 2081706 g22462 i0 62.1 0.530487804878049 29 11 53 0 90 4 604 632 HLT23269.1 carboxypeptidase regulatory-like domain-containing protein [Bacteriovoracaceae bacterium] diamond 87 41.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29413083 29413083 PRJNA492280_P_NODE_24909_length_164_cov_2.590551_g24802_i0 PRJNA492280 24909 164 2.590551 4.24850364 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 54.3 6.55e-7   NR MBX3019940.1 2026715 g24802 i0 100 0.457317073170732 25 0 45.7 0 75 1 153 177 MBX3019940.1 cell division ATP-binding protein FtsE [Pseudobdellovibrionaceae bacterium] diamond 75 54.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29444543 29444543 PRJNA492280_P_NODE_16350_length_164_cov_4.125984_g16243_i0 PRJNA492280 16350 164 4.125984 6.76661376 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 46.2 7.53e-4   NR MCM2351031.1 2081706 g16243 i0 83.3 0.439024390243902 24 4 43.9 0 76 5 285 308 MCM2351031.1 DNA polymerase IV [Bacteriovoracaceae bacterium] diamond 72 46.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29791911 29791911 PRJNA492280_P_NODE_11311_length_164_cov_18.322835_g11204_i0 PRJNA492280 11311 164 18.322835 30.0494494 Peredibacter starrii 28202 Bacteria Bacteria 45.4 0.00144   NR WP_321396741.1 28202 g11204 i0 32.9 1.5 82 26 97 1 160 2 85 166 WP_321396741.1 FHA domain-containing protein [Peredibacter starrii] diamond 246 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
30581713 30581713 PRJNA492280_P_NODE_33893_length_150_cov_3.522124_g33786_i0 PRJNA492280 33893 150 3.522124 5.283186 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 73.2 1.89e-13   NR MBS1984281.1 2053517 g33786 i0 76.2 0.84 42 10 84 0 20 145 101 142 MBS1984281.1 DDE-type integrase/transposase/recombinase [Bdellovibrionales bacterium] diamond 126 73.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31498662 31498662 PRJNA492280_P_NODE_21356_length_164_cov_3.094488_g21249_i0 PRJNA492280 21356 164 3.094488 5.07496032 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 53.1 2.42e-6   NR MBS1982881.1 2053517 g21249 i0 95.8 0.878048780487805 24 1 43.9 0 3 74 103 126 MBS1982881.1 hypothetical protein [Bdellovibrionales bacterium] diamond 144 53.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31704268 31704268 PRJNA492280_P_NODE_15237_length_164_cov_4.496063_g15130_i0 PRJNA492280 15237 164 4.496063 7.37354332 Bacteria 2 Bacteria Bacteria 67 8.79e-12   NR MBY0515327.1 2081706 g15130 i0 54.8 4.00609756097561 73 13 97 1 164 6 60 132 MBY0515327.1 FAD-dependent oxidoreductase [Bacteriovoracaceae bacterium] diamond 657 67 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31941178 31941178 PRJNA492280_P_NODE_29277_length_152_cov_2.095652_g29170_i0 PRJNA492280 29277 152 2.095652 3.18539104 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 57 9.86e-8   NR HEY8279721.1 3034175 g29170 i0 79.3 0.572368421052632 29 6 57.2 0 63 149 9 37 HEY8279721.1 family 1 glycosylhydrolase [Bdellovibrionota bacterium] diamond 87 57 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32337293 32337293 PRJNA492280_P_NODE_23019_length_164_cov_2.858268_g22912_i0 PRJNA492280 23019 164 2.858268 4.68755952 Bacteria 2 Bacteria Bacteria 49.3 6.18e-5   NR HXH30901.1 2081706 g22912 i0 95.5 1.64634146341463 22 1 40.2 0 159 94 242 263 HXH30901.1 ATP-dependent DNA ligase [Bacteriovoracaceae bacterium] diamond 270 49.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32384301 32384301 PRJNA492280_P_NODE_24779_length_164_cov_2.614173_g24672_i0 PRJNA492280 24779 164 2.614173 4.28724372 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 44.7 0.00247   NR MBY0515756.1 2081706 g24672 i0 85.7 0.384146341463415 21 3 38.4 0 2 64 210 230 MBY0515756.1 TetR/AcrR family transcriptional regulator [Bacteriovoracaceae bacterium] diamond 63 44.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32873373 32873373 PRJNA492280_P_NODE_17360_length_164_cov_3.866142_g17253_i0 PRJNA492280 17360 164 3.866142 6.34047288 Peredibacter 263370 Bacteria Bacteria 48.9 8.46e-5   NR WP_321397490.1 28202 g17253 i0 83.3 2.19512195121951 24 4 43.9 0 74 3 235 258 WP_321397490.1 5'-nucleotidase C-terminal domain-containing protein [Peredibacter starrii] diamond 360 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;