RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA492280" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA492280 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28734632 28734632 PRJNA492280_P_NODE_10967_length_165_cov_4.710938_g10860_i0 PRJNA492280 10967 165 4.710938 7.7730477 root 1 Root_unresolved Root_unresolved 85.9 7.7e-18   NR GFH48659.1 426638 g10860 i0 73.7 5.18181818181818 57 10 94.5 1 161 6 365 421 GFH48659.1 hypothetical protein CTEN210_05135 [Chaetoceros tenuissimus] diamond 855 86.3 0.995365005793743 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
28844691 28844691 PRJNA492280_P_NODE_12148_length_164_cov_7.102362_g12041_i0 PRJNA492280 12148 164 7.102362 11.64787368 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.06e-6   NR GKY93619.1 2872254 g12041 i0 91.7 0.439024390243902 24 2 43.9 0 93 164 258 281 GKY93619.1 hypothetical protein MPSEU_000329300 [Mayamaea pseudoterrestris] diamond 72 54.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
29902978 29902978 PRJNA492280_P_NODE_19751_length_164_cov_3.377953_g19644_i0 PRJNA492280 19751 164 3.377953 5.53984292 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00362   NR CAB9507415.1 568900 g19644 i0 73.9 2.54268292682927 23 6 42.1 0 94 162 302 324 CAB9507415.1 pyrophosphokinase 3, chloroplastic [Seminavis robusta] diamond 417 44.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
32067789 32067789 PRJNA492280_P_NODE_20018_length_164_cov_3.330709_g19911_i0 PRJNA492280 20018 164 3.330709 5.46236276 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 49.3 5.36e-5   NR VEU44921.1 183589 g19911 i0 46.9 1.33536585365854 49 20 78.7 1 35 163 55 103 VEU44921.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 219 49.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;