RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA492280" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA492280 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26791660 26791660 PRJNA492280_P_NODE_22501_length_164_cov_2.929134_g22394_i0 PRJNA492280 22501 164 2.929134 4.80377976 Natronomonas sp. 2184060 Archaea Archaea 51.2 1.19e-5   NR MFT4946158.1 2184060 g22394 i0 87.5 0.439024390243902 24 3 43.9 0 5 76 129 152 MFT4946158.1 putative membrane protein [Natronomonas sp.] diamond 72 51.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp.
28844699 28844699 PRJNA492280_P_NODE_31428_length_151_cov_3.140351_g31321_i0 PRJNA492280 31428 151 3.140351 4.74193001 Haloarcula amylovorans 2562280 Archaea Archaea 59.7 1.91e-9   NR WP_135306088.1 2562280 g31321 i0 92.9 0.556291390728477 28 2 55.6 0 87 4 84 111 WP_135306088.1 DUF6141 family protein [Haloarcula amylovorans] diamond 84 59.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula amylovorans
31751426 31751426 PRJNA492280_P_NODE_14437_length_164_cov_4.818898_g14330_i0 PRJNA492280 14437 164 4.818898 7.90299272 Haloarcula nitratireducens 2487749 Archaea Archaea 52.8 7.28e-7   NR WP_220581994.1 2487749 g14330 i0 82.4 0.621951219512195 34 1 62.2 1 164 63 21 49 WP_220581994.1 hypothetical protein [Haloarcula nitratireducens] diamond 102 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula nitratireducens
32605597 32605597 PRJNA492280_P_NODE_20340_length_164_cov_3.283465_g20233_i0 PRJNA492280 20340 164 3.283465 5.3848826 Haloarcula nitratireducens 2487749 Archaea Archaea 67.8 1.86e-11   NR WP_220581842.1 2487749 g20233 i0 62.5 1.17073170731707 64 8 87.8 1 161 18 25 88 WP_220581842.1 PAS domain S-box protein [Haloarcula nitratireducens] diamond 192 67.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula nitratireducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;