RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA489308" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA489308 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1724858 1724858 PRJNA489308_P_NODE_19982_length_287_cov_1.439252_g19906_i0 PRJNA489308 19982 287 1.439252 4.13065324 Spirotrichonymphida 285693 Parabasalia other_Eukaryota 131 2.9e-34   NR BAF48678.1 104086 g19906 i0 68.9 4.70383275261324 90 28 94.1 0 271 2 126 215 BAF48678.1 enolase, partial [Holomastigotoides mirabile] diamond 1350 131 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotoides Holomastigotoides mirabile
29492303 29492303 PRJNA489308_P_NODE_24870_length_268_cov_2.133333_g24794_i0 PRJNA489308 24870 268 2.133333 5.71733244 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 8.26e-4   NR XP_001329858.1 412133 g24794 i0 33.9 2.92164179104478 56 37 62.7 0 176 9 14 69 XP_001329858.1 phosphopyruvate hydratase protein [Trichomonas vaginalis G3] diamond 783 48.1 0.993762993762994 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30613348 30613348 PRJNA489308_P_NODE_20613_length_284_cov_2.189573_g20537_i0 PRJNA489308 20613 284 2.189573 6.21838732 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 44.7 0.0129   NR XP_001306132.1 412133 g20537 i0 34.9 0.665492957746479 63 38 64.4 2 1 183 56 117 XP_001306132.1 sperm-tail PG-rich repeat-containing protein [Trichomonas vaginalis G3] diamond 189 44.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31751384 31751384 PRJNA489308_P_NODE_23237_length_274_cov_1.532338_g23161_i0 PRJNA489308 23237 274 1.532338 4.19860612 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.1 0.0403   NR XP_001301974.1 412133 g23161 i0 51.4 0.405109489051095 37 18 40.5 0 118 8 330 366 XP_001301974.1 spectrin binding [Trichomonas vaginalis G3] diamond 111 43.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31799004 31799004 PRJNA489308_P_NODE_31057_length_251_cov_0.865169_g30981_i0 PRJNA489308 31057 251 0.865169 2.17157419 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.9 4.53e-6   NR XP_067770170.1 135588 g30981 i0 38.7 1.57768924302789 62 38 74.1 0 222 37 298 359 XP_067770170.1 histidine acid phosphatase [Histomonas meleagridis] diamond 396 53.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;