RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA489308" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA489308 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27550172 27550172 PRJNA489308_P_NODE_14764_length_315_cov_1.272727_g14688_i0 PRJNA489308 14764 315 1.272727 4.00909005 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 45.1 0.0127   NR MFP4415963.1 2813024 g14688 i0 31.8 0.838095238095238 88 53 77.1 2 264 22 277 364 MFP4415963.1 aminopeptidase [Chitinispirillaceae bacterium] diamond 264 45.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
28055344 28055344 PRJNA489308_P_NODE_20805_length_284_cov_1.170616_g20729_i0 PRJNA489308 20805 284 1.170616 3.32454944 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 105 3.79e-25   NR MBD3419113.1 2663014 g20729 i0 53.1 1.01408450704225 96 43 99.3 1 2 283 124 219 MBD3419113.1 phospholipase [Chitinivibrionales bacterium] diamond 288 105 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;