RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA488043" and tax_phylum = "Candidatus Methanomethylicota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methanomethylicota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA488043 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30076222 30076222 PRJNA488043_P_NODE_2112_length_1066_cov_3.185149_g621_i2 PRJNA488043 2112 1066 3.185149 33.95368834 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 52.4 4.83e-5   NR MEM2002118.1 3058293 g621 i2 42.2 0.180112570356473 64 35 18 2 882 691 1 62 MEM2002118.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 192 52.4 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
31024251 31024251 PRJNA488043_P_NODE_2055_length_1087_cov_3.140832_g621_i1 PRJNA488043 2055 1087 3.140832 34.14084384 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 52.4 4.94e-5   NR MEM2002118.1 3058293 g621 i1 42.2 0.176632934682613 64 35 17.7 2 903 712 1 62 MEM2002118.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 192 52.4 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
31719839 31719839 PRJNA488043_P_NODE_2157_length_1053_cov_3.283203_g621_i3 PRJNA488043 2157 1053 3.283203 34.57212759 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 52.4 4.77e-5   NR MEM2002118.1 3058293 g621 i3 42.2 0.182336182336182 64 35 18.2 2 864 673 1 62 MEM2002118.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 192 52.4 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;