RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA488043" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29065980 29065980 PRJNA488043_P_NODE_18168_length_190_cov_2.055901_g15926_i0 PRJNA488043 18168 190 2.055901 3.9062119 Malassezia arunalokei 1514897 Fungi Fungi 65.9 1.33e-10   NR WFD16437.1 1514897 g15926 i0 85.4 0.647368421052632 41 6 64.7 0 189 67 979 1019 WFD16437.1 hypothetical protein MARU1_002474 [Malassezia arunalokei] diamond 123 65.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia arunalokei
30581650 30581650 PRJNA488043_P_NODE_7493_length_440_cov_2.844282_g5342_i0 PRJNA488043 7493 440 2.844282 12.5148408 Phakopsora pachyrhizi 170000 Fungi Fungi 42.7 0.0426   NR KAI8449393.1 170000 g5342 i0 35.8 0.456818181818182 67 40 45.7 1 163 363 7 70 KAI8449393.1 hypothetical protein BY996DRAFT_6605057 [Phakopsora pachyrhizi] diamond 201 42.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Phakopsoraceae Phakopsora Phakopsora pachyrhizi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;