RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA488043" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA488043 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27708577 27708577 PRJNA488043_P_NODE_13664_length_249_cov_2.109091_g11422_i0 PRJNA488043 13664 249 2.109091 5.25163659 Homalodisca vitripennis 197043 Arthropoda Arthropoda 47.8 1.55e-4   NR KAG8280132.1 197043 g11422 i0 50.9 3.43373493975904 57 28 68.7 0 177 7 23 79 KAG8280132.1 Proteasome subunit alpha type-4 [Homalodisca vitripennis] diamond 855 47.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Cicadellidae Homalodisca Homalodisca vitripennis
27945261 27945261 PRJNA488043_P_NODE_14885_length_229_cov_3.255000_g12643_i0 PRJNA488043 14885 229 3.255 7.45395 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.8 2.31e-17   NR XP_065585136.1 6661 g12643 i0 70.7 13.4803493449782 58 17 76 0 174 1 3 60 XP_065585136.1 large ribosomal subunit protein uL1-like [Artemia franciscana] diamond 3087 83.2 0.995192307692308 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Anostraca Artemiidae Artemia Artemia franciscana
28213070 28213070 PRJNA488043_P_NODE_16046_length_213_cov_3.184783_g13804_i0 PRJNA488043 16046 213 3.184783 6.78358779 Artemia franciscana 6661 Arthropoda Arthropoda 80.5 1.47e-16   NR XP_065585136.1 6661 g13804 i0 69.6 0.788732394366197 56 17 78.9 0 168 1 5 60 XP_065585136.1 large ribosomal subunit protein uL1-like [Artemia franciscana] diamond 168 80.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Anostraca Artemiidae Artemia Artemia franciscana
31276903 31276903 PRJNA488043_S_NODE_1335_length_167_cov_3.355072_g1324_i0 PRJNA488043 1335 167 3.355072 5.60297024 Idotea baltica 82763 Arthropoda Arthropoda 70.5 3.65e-13   NR MCL4113740.1 82763 g1324 i0 64.2 0.952095808383233 53 19 95.2 0 163 5 31 83 MCL4113740.1 hypothetical protein [Idotea baltica] diamond 159 70.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Isopoda Idoteidae Idotea Idotea baltica
31340287 31340287 PRJNA488043_P_NODE_15756_length_217_cov_2.127660_g13514_i0 PRJNA488043 15756 217 2.12766 4.6170222 Lonomia obliqua 304329 Arthropoda Arthropoda 46.2 2.25e-4   NR AAV91398.1 304329 g13514 i0 85.2 0.746543778801843 27 4 37.3 0 1 81 60 86 AAV91398.1 ribosomal protein 26 [Lonomia obliqua] diamond 162 46.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Saturniidae Lonomia Lonomia obliqua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;