RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA488043" and tax_clade = "sulfur-oxidizing symbionts"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27803016 27803016 PRJNA488043_P_NODE_11764_length_288_cov_4.347490_g9523_i0 PRJNA488043 11764 288 4.34749 12.5207712 endosymbiont of Escarpia spicata 2200908 Bacteria Bacteria 53.9 7.17e-7   NR RDH86382.1 2200908 g9523 i0 60.9 0.479166666666667 46 18 47.9 0 180 43 13 58 RDH86382.1 MAG: hypothetical protein DIZ78_09440 [endosymbiont of Escarpia spicata] diamond 138 53.9 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Escarpia spicata
28560774 28560774 PRJNA488043_P_NODE_10047_length_338_cov_3.915858_g7806_i0 PRJNA488043 10047 338 3.915858 13.23560004 endosymbiont of Escarpia spicata 2200908 Bacteria Bacteria 56.2 1.51e-7   NR RDH86382.1 2200908 g7806 i0 52.7 0.488165680473373 55 26 48.8 0 207 43 4 58 RDH86382.1 MAG: hypothetical protein DIZ78_09440 [endosymbiont of Escarpia spicata] diamond 165 56.2 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Escarpia spicata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;