RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA488043" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27266050 27266050 PRJNA488043_P_NODE_22123_length_153_cov_2.532258_g19881_i0 PRJNA488043 22123 153 2.532258 3.87435474 Lupinus luteus 3873 Plants Plants 48.9 1.03e-5   NR CAL0319598.1 3873 g19881 i0 51.1 0.92156862745098 47 21 92.2 1 13 153 30 74 CAL0319598.1 unnamed protein product [Lupinus luteus] diamond 141 48.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lupinus Lupinus luteus
31909665 31909665 PRJNA488043_S_NODE_1397_length_163_cov_38.664179_g1386_i0 PRJNA488043 1397 163 38.664179 63.02261177 Diphasiastrum complanatum 34168 Plants Plants 50.1 1.94e-5   NR KAJ7538263.1 34168 g1386 i0 67.6 1.28834355828221 37 12 68.1 0 53 163 8 44 KAJ7538263.1 hypothetical protein O6H91_11G040300 [Diphasiastrum complanatum] diamond 210 50.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Lycopodiopsida Lycopodiales Lycopodiaceae Diphasiastrum Diphasiastrum complanatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;